Strain identifier

BacDive ID: 2978

Type strain: Yes

Species: Malikia granosa

Strain Designation: P1

Strain history: DSM 15619 <-- S. Spring P1.

NCBI tax ID(s): 263067 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8 (current version):
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8 (current version)

General

@ref: 5912

BacDive-ID: 2978

DSM-Number: 15619

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Malikia granosa P1 is a mesophilic bacterium that was isolated from activated sludge.

NCBI tax id

  • NCBI tax id: 263067
  • Matching level: species

strain history

@refhistory
5912<- S. Spring; P1 <- M. Wagner
67770DSM 15619 <-- S. Spring P1.

doi: 10.13145/bacdive2978.20230509.8

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Malikia
  • species: Malikia granosa
  • full scientific name: Malikia granosa Spring et al. 2005

@ref: 5912

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Malikia

species: Malikia granosa

full scientific name: Malikia granosa Spring et al. 2005

strain designation: P1

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes92.819
69480100negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5912R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
5912NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
33210MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromatiyesDistilled water make up to (1000.000 ml);R2A agar (18.200 g)

culture temp

@refgrowthtypetemperaturerange
5912positivegrowth28mesophilic
33210positivegrowth30mesophilic
67770positivegrowth35mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.997

observation

  • @ref: 67770
  • observation: quinones: Q-8

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
5912activated sludgeMunich, Kläranlage GroßlappenGermanyDEUEurope
67770Activated sludge in a wastewater treatment plantMunichGermanyDEUEurope

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Waste
  • Cat3: #Activated sludge

taxonmaps

  • @ref: 69479
  • File name: preview.99_42391.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_872;97_3698;98_30803;99_42391&stattab=map
  • Last taxonomy: Malikia granosa
  • 16S sequence: AJ627188
  • Sequence Identity:
  • Total samples: 312
  • soil counts: 13
  • aquatic counts: 269
  • animal counts: 15
  • plant counts: 15

Safety information

risk assessment

  • @ref: 5912
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Malikia granosa 16S rRNA gene, type strain P1
  • accession: AJ627188
  • length: 1525
  • database: ena
  • NCBI tax ID: 263067

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Malikia granosa strain P1263067.3wgspatric263067
66792Malikia granosa P12887120766draftimg263067
67770Malikia granosa P1GCA_002980595contigncbi263067

GC content

@refGC-contentmethod
591267
6777067high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
spore-formingno99.997yes
anaerobicno96.29no
gram-positiveno100no
thermophileno98.695yes
motileyes92.819yes

External links

@ref: 5912

culture collection no.: DSM 15619, CIP 108194, JCM 12706

straininfo link

@refpassport
20218http://www.straininfo.net/strains/386457
20218http://www.straininfo.net/strains/386456
20218http://www.straininfo.net/strains/386458

literature

  • topic: Phylogeny
  • Pubmed-ID: 15774634
  • title: Malikia granosa gen. nov., sp. nov., a novel polyhydroxyalkanoate- and polyphosphate-accumulating bacterium isolated from activated sludge, and reclassification of Pseudomonas spinosa as Malikia spinosa comb. nov.
  • authors: Spring S, Wagner M, Schumann P, Kampfer P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63356-0
  • year: 2005
  • mesh: Comamonadaceae/*classification/genetics/isolation & purification, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polyesters/*metabolism, Polyphosphates/*metabolism, Pseudomonas/*classification/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5912Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15619)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15619
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33210Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5789
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1