Strain identifier

BacDive ID: 2974

Type strain: No

Species: Lampropedia hyalina

Strain Designation: LSCC94

Strain history: <- L. Stante; LSCC94

NCBI tax ID(s): 198706 (species)

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General

@ref: 5851

BacDive-ID: 2974

DSM-Number: 15336

keywords: 16S sequence, Bacteria, mesophilic

description: Lampropedia hyalina LSCC94 is a mesophilic bacterium that was isolated from activated sludge of laboratory plants operating on diary and piggery wastewater.

NCBI tax id

  • NCBI tax id: 198706
  • Matching level: species

strain history

  • @ref: 5851
  • history: <- L. Stante; LSCC94

doi: 10.13145/bacdive2974.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Lampropedia
  • species: Lampropedia hyalina
  • full scientific name: Lampropedia hyalina (Ehrenberg 1832) Schroeter 1886 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Gonium hyalinum

@ref: 5851

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Lampropedia

species: Lampropedia hyalina

full scientific name: Lampropedia hyalina (Ehrenberg 1832) Schroeter 1886 emend. Li et al. 2015

strain designation: LSCC94

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5851HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428)yeshttps://mediadive.dsmz.de/medium/428Name: HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428) Composition: Agar 19.802 g/l Na2HPO4 x 2 H2O 2.87129 g/l KH2PO4 2.27723 g/l D-Glucose 1.9802 g/l Na-lactate 0.990099 g/l Na-pyruvate 0.990099 g/l D-Mannitol 0.990099 g/l DL-Malate 0.990098 g/l Na-acetate 0.990098 g/l Yeast extract 0.990098 g/l NH4Cl 0.990098 g/l Disodium succinate 0.990098 g/l MgSO4 x 7 H2O 0.495049 g/l Ferric ammonium citrate 0.049505 g/l CaCl2 x 2 H2O 0.00990098 g/l NaVO3 x H2O 0.00495049 g/l Thiamine-HCl x 2 H2O 0.00247525 g/l Nicotinic acid 0.00247525 g/l Pyridoxine hydrochloride 0.00247525 g/l Calcium pantothenate 0.00247525 g/l H3BO3 0.00148515 g/l CoCl2 x 6 H2O 0.000990099 g/l Riboflavin 0.00049505 g/l ZnSO4 x 7 H2O 0.00049505 g/l MnCl2 x 4 H2O 0.000148515 g/l Na2MoO4 x 2 H2O 0.000148515 g/l NiCl2 x 6 H2O 9.90099e-05 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Vitamin B12 4.95049e-05 g/l Folic acid 9.90099e-06 g/l Biotin 4.9505e-06 g/l Distilled water
5851REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)yeshttps://mediadive.dsmz.de/medium/830cName: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 5851
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

compound production

  • @ref: 5851
  • compound: poly(ß-hydroxybutyric acid)

Isolation, sampling and environmental information

isolation

  • @ref: 5851
  • sample type: activated sludge of laboratory plants operating on diary and piggery wastewater
  • geographic location: Bologna
  • country: Italy
  • origin.country: ITA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Waste#Activated sludge
#Engineered#Waste#Industrial wastewater
#Engineered#Waste#Water treatment plant

taxonmaps

  • @ref: 69479
  • File name: preview.99_7467.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_3488;97_4275;98_5472;99_7467&stattab=map
  • Last taxonomy: Lampropedia hyalina subclade
  • 16S sequence: AY291119
  • Sequence Identity:
  • Total samples: 1276
  • soil counts: 72
  • aquatic counts: 1100
  • animal counts: 80
  • plant counts: 24

Safety information

risk assessment

  • @ref: 5851
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Lampropedia hyalina strain DSM 15336 16S ribosomal RNA gene, partial sequence
  • accession: AY291119
  • length: 1506
  • database: ena
  • NCBI tax ID: 198706

External links

@ref: 5851

culture collection no.: DSM 15336

straininfo link

  • @ref: 72496
  • straininfo: 127346

literature

  • topic: Phylogeny
  • Pubmed-ID: 15388733
  • title: Emended description of the species Lampropedia hyalina.
  • authors: Lee N, Cellamare CM, Bastianutti C, Rossello-Mora R, Kampfer P, Ludwig W, Schleifer KH, Stante L
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.02885-0
  • year: 2004
  • mesh: Aerobiosis, Anaerobiosis, Bacterial Typing Techniques, Base Composition, Betaproteobacteria/*classification/cytology/genetics/physiology, Comamonadaceae/classification/genetics, Comamonas/classification/genetics, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Delftia/classification/genetics, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Neisseriaceae/classification/genetics, Nucleic Acid Hybridization, Phylogeny, Polyphosphates/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Sequence Analysis, DNA
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5851Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15336)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15336
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72496Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID127346.1StrainInfo: A central database for resolving microbial strain identifiers