Strain identifier

BacDive ID: 2936

Type strain: Yes

Species: Comamonas odontotermitis

Strain history: <- LMG <- W.-M. Chen, Nat. Kaohsiung Marine University Taiwan; Dant 3-8

NCBI tax ID(s): 379895 (species)

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General

@ref: 16039

BacDive-ID: 2936

DSM-Number: 22023

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped, colony-forming

description: Comamonas odontotermitis DSM 22023 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from gut of the termite Odontotermes formosanus .

NCBI tax id

  • NCBI tax id: 379895
  • Matching level: species

strain history

  • @ref: 16039
  • history: <- LMG <- W.-M. Chen, Nat. Kaohsiung Marine University Taiwan; Dant 3-8

doi: 10.13145/bacdive2936.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Comamonas
  • species: Comamonas odontotermitis
  • full scientific name: Comamonas odontotermitis Chou et al. 2007

@ref: 16039

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Comamonas

species: Comamonas odontotermitis

full scientific name: Comamonas odontotermitis Chou et al. 2007

type strain: yes

Morphology

cell morphology

  • @ref: 23081
  • gram stain: negative
  • cell length: 2.0-2.5 µm
  • cell width: 0.5-1.0 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 23081
  • colony size: 1.5-3.0 mm
  • colony color: semi-transparent
  • colony shape: circular
  • incubation period: 2 days
  • medium used: nutrient agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16039TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
23081Nutrient agar (NA)yes

culture temp

@refgrowthtypetemperaturerange
16039positivegrowth28mesophilic
23081positivegrowth15.0-37.0
23081positiveoptimum28.0-35.0mesophilic

culture pH

@refabilitytypepHPH range
23081positiveoptimum7.0
23081positivegrowth6.0-9.0alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 23081
  • oxygen tolerance: aerobe

spore formation

  • @ref: 23081
  • spore formation: no

halophily

@refsalttested relationconcentrationgrowth
23081NaCloptimum0.0-1.0 %
23081NaClgrowth0.0-2.0 %positive

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2308127613amygdalin-builds acid from
2308122599arabinose-builds acid from
2308117234glucose-builds acid from
2308117268myo-inositol-builds acid from
2308129864mannitol-builds acid from
2308128053melibiose-builds acid from
2308126546rhamnose-builds acid from
2308130911sorbitol-builds acid from
2308117992sucrose-builds acid from
2308117234glucose-fermentation
2308117128adipate-growth
2308122599arabinose-growth
2308127689decanoate-growth
2308117234glucose-growth
2308117306maltose-growth
2308137684mannose-growth
23081506227N-acetylglucosamine-growth
230814853esculin-hydrolysis
230815291gelatin-hydrolysis
23081O-nitrophenyl-beta-D-galactopyranosid-hydrolysis
2308117521(-)-quinic acid-oxidation
23081620642,3-butanediol-oxidation
23081181014-hydroxyphenylacetic acid-oxidation
2308115963ribitol-oxidation
2308140585alpha-cyclodextrin-oxidation
2308117925alpha-D-glucose-oxidation
2308136219alpha-lactose-oxidation
2308116383cis-aconitate-oxidation
2308118333D-arabitol-oxidation
2308117057cellobiose-oxidation
2308115824D-fructose-oxidation
2308115895D-galactonic acid lactone-oxidation
2308112936D-galactose-oxidation
2308118024D-galacturonic acid-oxidation
2308130612D-glucarate-oxidation
2308117784D-glucosaminic acid-oxidation
2308114314D-glucose 6-phosphate-oxidation
2308116024D-mannose-oxidation
2308128053melibiose-oxidation
2308127605D-psicose-oxidation
2308116634raffinose-oxidation
2308116523D-serine-oxidation
2308117924D-sorbitol-oxidation
2308116551D-trehalose-oxidation
2308123652dextrin-oxidation
2308117126DL-carnitine-oxidation
2308117113erythritol-oxidation
2308116000ethanolamine-oxidation
2308116865gamma-aminobutyric acid-oxidation
2308128066gentiobiose-oxidation
2308129042glucose 1-phosphate-oxidation
2308132323glucuronamide-oxidation
2308117754glycerol-oxidation
2308114336glycerol 1-phosphate-oxidation
2308117596inosine-oxidation
2308117240itaconate-oxidation
2308121217L-alaninamide-oxidation
2308130849L-arabinose-oxidation
2308118287L-fucose-oxidation
2308115971L-histidine-oxidation
2308162345L-rhamnose-oxidation
2308117115L-serine-oxidation
230816359lactulose-oxidation
2308115792malonate-oxidation
2308117306maltose-oxidation
23081320055methyl beta-D-glucopyranoside-oxidation
2308117268myo-inositol-oxidation
2308128037N-acetylgalactosamine-oxidation
23081506227N-acetylglucosamine-oxidation
2308150048phenylethylamine-oxidation
2308117148putrescine-oxidation
2308117992sucrose-oxidation
2308117748thymidine-oxidation
2308132528turanose-oxidation
2308116704uridine-oxidation
2308127248urocanic acid-oxidation
2308117151xylitol-oxidation
2308116947citrate+growth
2308124265gluconate+growth
2308125115malate+growth
2308118401phenylacetate+growth
23081645522-hydroxybutyrate+oxidation
23081167632-oxobutanoate+oxidation
23081309162-oxoglutarate+oxidation
23081286442-oxopentanoate+oxidation
23081370543-hydroxybutyrate+oxidation
23081182404-hydroxy-L-proline+oxidation
23081167244-hydroxybutyrate+oxidation
2308130089acetate+oxidation
2308173706bromosuccinate+oxidation
2308115570D-alanine+oxidation
2308124996lactate+oxidation
2308115740formate+oxidation
2308128087glycogen+oxidation
2308173804glycyl L-aspartic acid+oxidation
2308116977L-alanine+oxidation
2308173786L-alanylglycine+oxidation
2308117196L-asparagine+oxidation
2308129991L-aspartate+oxidation
2308115603L-leucine+oxidation
2308115729L-ornithine+oxidation
2308117295L-phenylalanine+oxidation
23081L-proline-4-nitroanilide+oxidation
2308118183L-pyroglutamic acid+oxidation
2308116857L-threonine+oxidation
2308151850methyl pyruvate+oxidation
2308175146monomethyl succinate+oxidation
2308173784glycyl-l-glutamate+oxidation
2308117272propionate+oxidation
2308141865sebacic acid+oxidation
23081143136succinamate+oxidation
2308130031succinate+oxidation
2308153423tween 40+oxidation
2308153426tween 80+oxidation
2308117632nitrate+reduction
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantis sensitive
2308128971ampicillinyesyes
2308118208penicillin gyesyes
2308128077rifampicinyesyes
2308117698chloramphenicolyesyes
2308117833gentamicinyesyes
230816104kanamycinyesyes
23081100147nalidixic acidyesyes
2308128368novobiocinyesyes
2308117076streptomycinyesyes
2308127902tetracyclineyesyes

metabolite production

@refChebi-IDmetaboliteproduction
2308135581indoleno
2308116136hydrogen sulfideno
2308115688acetoinyes
6836935581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
2308115688acetoin+
6836935581indole-

enzymes

@refvalueactivityec
23081acid phosphatase+3.1.3.2
23081alkaline phosphatase+3.1.3.1
23081alpha-chymotrypsin-3.4.21.1
23081alpha-fucosidase-3.2.1.51
23081alpha-galactosidase-3.2.1.22
23081alpha-glucosidase-3.2.1.20
23081alpha-mannosidase-3.2.1.24
23081arginine dihydrolase-3.5.3.6
23081beta-galactosidase-3.2.1.23
23081beta-glucosidase-3.2.1.21
23081beta-glucuronidase-3.2.1.31
23081catalase+1.11.1.6
23081cystine arylamidase-3.4.11.3
23081cytochrome oxidase+1.9.3.1
23081esterase (C 4)+
23081esterase lipase (C 8)+
23081gelatinase-
23081leucine arylamidase+3.4.11.1
23081lipase (C 14)-
23081lysine decarboxylase-4.1.1.18
23081N-acetyl-beta-glucosaminidase-3.2.1.52
23081naphthol-AS-BI-phosphohydrolase+
23081ornithine decarboxylase-4.1.1.17
23081trypsin-3.4.21.4
23081tryptophan deaminase-4.1.99.1
23081urease-3.5.1.5
23081valine arylamidase+
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
16039+----------+--++++--+

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture temperature
16039gut of the termite Odontotermes formosanus (Shiraki)Odontotermes formosanussouthern Taiwan, Pingtung CountyTaiwanTWNAsia
23081the gut of termites collected from a decayed bamboo tree locateddesoxycholate agar plates (BD Difco)25.0

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Gastrointestinal tract#Stomach
#Host#Plants#Decomposing plant
#Host#Arthropoda#Insecta
#Host#Plants#Herbaceous plants (Grass,Crops)

Safety information

risk assessment

  • @ref: 16039
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16039
  • description: Comamonas odontotermitis strain Dant 3-8 16S ribosomal RNA gene, partial sequence
  • accession: DQ453128
  • length: 1453
  • database: ena
  • NCBI tax ID: 379895

GC content

@refGC-contentmethod
1603961.6
2308161.6high performance liquid chromatography (HPLC)

External links

@ref: 16039

culture collection no.: DSM 22023, BCRC 17576, LMG 23579, Dant 3-8

straininfo link

  • @ref: 72458
  • straininfo: 290800

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17392226Comamonas odontotermitis sp. nov., isolated from the gut of the termite Odontotermes formosanus.Chou JH, Sheu SY, Lin KY, Chen WM, Arun AB, Young CCInt J Syst Evol Microbiol10.1099/ijs.0.64551-02007Animals, Comamonas/*classification/genetics/isolation & purification/physiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Digestive System/microbiology, Isoptera/*microbiology, Molecular Sequence Data, RNA, Ribosomal, 16S/geneticsGenetics
Phylogeny18175717Comamonas composti sp. nov., isolated from food waste compost.Young CC, Chou JH, Arun AB, Yen WS, Sheu SY, Shen FT, Lai WA, Rekha PD, Chen WMInt J Syst Evol Microbiol10.1099/ijs.0.65277-02008Bacterial Typing Techniques, Comamonas/*classification/genetics/isolation & purification/physiology, DNA, Bacterial/analysis, Fatty Acids/analysis, *Food Microbiology, Genes, rRNA, Genotype, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Refuse Disposal/*methods, Sequence Analysis, DNA, Species Specificity, TaiwanGenetics
Phylogeny18758728Comamonas granuli sp. nov., isolated from granules used in a wastewater treatment plant.Kim KH, Ten LN, Liu QM, Im WT, Lee STJ Microbiol10.1007/s12275-008-0019-02008Base Composition, Bioreactors/microbiology, Comamonas/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, *Industrial Waste, Phylogeny, RNA, Ribosomal, 16S/genetics, Sewage/*microbiologyMetabolism
Phylogeny22581903Comamonas guangdongensis sp. nov., isolated from subterranean forest sediment, and emended description of the genus Comamonas.Zhang J, Wang Y, Zhou S, Wu C, He J, Li FInt J Syst Evol Microbiol10.1099/ijs.0.040188-02012Bacterial Typing Techniques, Base Composition, China, Comamonas/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Trees/microbiology, Ubiquinone/analysisGenetics
Phylogeny25242539Description of Comamonas serinivorans sp. nov., isolated from wheat straw compost.Zhu D, Xie C, Huang Y, Sun J, Zhang WInt J Syst Evol Microbiol10.1099/ijs.0.066688-02014Bacterial Typing Techniques, Base Composition, China, Comamonas/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Triticum/*microbiology, Ubiquinone/chemistryGenetics
Phylogeny26541594Comamonas phosphati sp. nov., isolated from a phosphate mine.Xie F, Ma H, Quan S, Liu D, Chen GInt J Syst Evol Microbiol10.1099/ijsem.0.0007422015Bacterial Typing Techniques, Base Composition, China, Comamonas/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Mining, Molecular Sequence Data, Nucleic Acid Hybridization, *Phosphates, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16039Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22023)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22023
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23081Jui-Hsing Chou,Shih-Yi Sheu,Kuan-Yin Lin,Wen-Ming Chen,A. B. Arun,Chiu-Chung Young10.1099/ijs.0.64551-0Comamonas odontotermitis sp. nov., isolated from the gut of the termite Odontotermes formosanusIJSEM 57: 887-891 200717392226
68369Automatically annotated from API 20NE
72458Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID290800.1StrainInfo: A central database for resolving microbial strain identifiers