Strain identifier

BacDive ID: 2928

Type strain: Yes

Species: Comamonas aquatica

Strain history: CIP <- 2003, CCUG <- 1984, K. Kersters, LMG, Gent, Belgium <- 1981, ATCC <- A.J. Kluyver

NCBI tax ID(s): 225991 (species)

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General

@ref: 3491

BacDive-ID: 2928

DSM-Number: 9155

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Comamonas aquatica DSM 9155 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Environment, Freshwater.

NCBI tax id

  • NCBI tax id: 225991
  • Matching level: species

strain history

@refhistory
3491<- ATCC <- A. J. Kluyver
116430CIP <- 2003, CCUG <- 1984, K. Kersters, LMG, Gent, Belgium <- 1981, ATCC <- A.J. Kluyver

doi: 10.13145/bacdive2928.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Comamonas
  • species: Comamonas aquatica
  • full scientific name: Comamonas aquatica (Hylemon et al. 1973) Wauters et al. 2003

  • synonyms

    • @ref: 20215
    • synonym: Aquaspirillum aquaticum

@ref: 3491

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Comamonas

species: Comamonas aquatica

full scientific name: Comamonas aquatica (Hylemon et al. 1973) Wauters et al. 2003

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityflagellum arrangement
23079negativerod-shapedyeslophotrichous
116430negativerod-shapedyes

colony morphology

  • @ref: 23079
  • colony size: 1.0-1.5 mm
  • incubation period: 1 day
  • medium used: blood agar

pigmentation

  • @ref: 116430
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
23079blood agaryes
23079tryptic soy agar and brothyes
36671MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
3491NUTRIENT AGAR (DSMZ Medium 1)yesName: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/1
116430CIP Medium 328yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=328
116430CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
23079positivegrowth30.0mesophilic
23079positivegrowth35.0mesophilic
23079positivegrowth40.0thermophilic
23079nogrowth42.0thermophilic
23079nogrowth44.0thermophilic
36671positivegrowth30mesophilic
3491positivegrowth30mesophilic
116430positivegrowth5-41

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
23079aerobe
116430obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
116430NaClpositivegrowth0-2 %
116430NaClnogrowth4 %
116430NaClnogrowth6 %
116430NaClnogrowth8 %
116430NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2307930742ethylene glycol-builds acid from
23079161933-hydroxybenzoate-growth
2307916977L-alanine-growth
230794853esculin-hydrolysis
230795291gelatin-hydrolysis
2307918186tyrosine-hydrolysis
2307916301nitrite-reduction
2307916947citrate+carbon source
23079370543-hydroxybutyrate+growth
2307930089acetate+growth
2307917240itaconate+growth
23079L-proline-4-nitroanilide+growth
2307924996lactate+growth
2307917272propionate+growth
230799300suberic acid+growth
2307931011valerate+growth
2307928938ammonium+nitrogen source
2307917632nitrate+reduction
23079178794-hydroxybenzoate+/-growth
2307927689decanoate+/-growth
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
11643016947citrate-carbon source
1164304853esculin-hydrolysis
11643017632nitrate+reduction
11643016301nitrite-reduction
11643017632nitrate-respiration

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitiveis resistant
2307937943colistinyesyes
2307950453desferrioxamineyesyes
1164300129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)yesnoyes

metabolite production

@refChebi-IDmetaboliteproduction
2307935581indoleno
2307916136hydrogen sulfideno
6836935581indoleno
11643035581indoleno

metabolite tests

@refChebi-IDmetabolitecitrate testindole test
2307916947citrate+
6836935581indole-

enzymes

@refvalueactivityec
23079alkaline phosphatase-3.1.3.1
23079arginine dihydrolase-3.5.3.6
23079catalase+1.11.1.6
23079cytochrome oxidase+1.9.3.1
23079lysine decarboxylase-4.1.1.18
23079ornithine decarboxylase-4.1.1.17
23079pyrrolidonyl arylamidase-3.4.19.3
23079trypsin-3.4.21.4
23079urease-3.5.1.5
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
116430oxidase+
116430beta-galactosidase-3.2.1.23
116430alcohol dehydrogenase-1.1.1.1
116430gelatinase+/-
116430amylase+
116430DNase+
116430caseinase+3.4.21.50
116430catalase+1.11.1.6
116430tween esterase+
116430lecithinase+
116430lipase-
116430lysine decarboxylase-4.1.1.18
116430ornithine decarboxylase-4.1.1.17
116430protease+
116430tryptophan deaminase-
116430urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116430--++-+-----+--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
3491+-------------+--+--+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116430------------------------------------------------++----------+-++-----------+---+++-----+++++----+-+

Isolation, sampling and environmental information

isolation

  • @ref: 116430
  • sample type: Environment, Freshwater

taxonmaps

  • @ref: 69479
  • File name: preview.99_1204.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_704;97_822;98_953;99_1204&stattab=map
  • Last taxonomy: Comamonas aquatica
  • 16S sequence: AJ430344
  • Sequence Identity:
  • Total samples: 8032
  • soil counts: 542
  • aquatic counts: 2457
  • animal counts: 4843
  • plant counts: 190

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
34912Risk group (German classification)
1164301Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Comamonas aquatica strain CIP 107986 16S ribosomal RNA gene, partial sequenceEU0241401316ena225991
20218Comamonas aquatica gene for 16S rRNA, partial sequence, strain: NBRC 14918AB6807041454ena225991
23079Comamonas aquatica partial 16S rRNA gene, type strain LMG 2370TAJ4303441345nuccore225991

GC content

  • @ref: 23079
  • GC-content: 64.0

External links

@ref: 3491

culture collection no.: DSM 9155, ATCC 11330, CCUG 17395, LMG 2370, CIP 107986, CCUG 15845

straininfo link

  • @ref: 72451
  • straininfo: 2019

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20207803Comamonas zonglianii sp. nov., isolated from phenol-contaminated soil.Yu XY, Li YF, Zheng JW, Li Y, Li L, He J, Li SPInt J Syst Evol Microbiol10.1099/ijs.0.019612-02010Bacterial Typing Techniques, Base Composition, Comamonas/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phenol/*chemistry, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil/chemistry, *Soil Microbiology, Soil Pollutants/*chemistryGenetics
Phylogeny23125317Comamonas jiangduensis sp. nov., a biosurfactant-producing bacterium isolated from agricultural soil.Sun LN, Zhang J, Chen Q, He J, Li QF, Li SPInt J Syst Evol Microbiol10.1099/ijs.0.045716-02012Agriculture, Bacterial Typing Techniques, Base Composition, China, Comamonas/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Oryza/microbiology, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Surface-Active Agents/metabolism, UbiquinoneGenetics
Phylogeny26541594Comamonas phosphati sp. nov., isolated from a phosphate mine.Xie F, Ma H, Quan S, Liu D, Chen GInt J Syst Evol Microbiol10.1099/ijsem.0.0007422015Bacterial Typing Techniques, Base Composition, China, Comamonas/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Mining, Molecular Sequence Data, Nucleic Acid Hybridization, *Phosphates, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryGenetics
Phylogeny30783796Bacterial Community Analysis on the Skin of Odorrana grahami and Proposal of Comamonas aquatica subsp. aquatica subsp. nov. and Comamonas aquatica subsp. rana subsp. nov.Zhao X, Du Z, Chen J, Wang R, Zhou Y, Lai RCurr Microbiol10.1007/s00284-019-01648-12019Animals, Anti-Bacterial Agents/pharmacology, Antimicrobial Cationic Peptides/chemistry/pharmacology, Bacteria/*classification/genetics, Comamonas/*classification/drug effects/genetics/*physiology, DNA, Bacterial/genetics, Drug Resistance, Multiple, Bacterial, Microbial Sensitivity Tests, Nucleic Acid Hybridization, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Ranidae/*microbiology, Sequence Analysis, DNA, Skin/chemistry/*microbiologyPhenotype

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3491Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9155)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9155
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23079Georges Wauters,Thierry De Baere,Anne Willems,Enevold Falsen,Mario Vaneechoutte10.1099/ijs.0.02450-0Description of Comamonas aquatica comb. nov. and Comamonas kerstersii sp. nov. for two subgroups of Comamonas terrigena and emended description of Comamonas terrigenaIJSEM 53: 859-862 200312807213
36671Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5557
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72451Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID2019.1StrainInfo: A central database for resolving microbial strain identifiers
116430Curators of the CIPCollection of Institut Pasteur (CIP 107986)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107986