Strain identifier

BacDive ID: 2914

Type strain: No

Species: Comamonas testosteroni

Strain Designation: 31A

Strain history: <- D. Jendrossek (Comamonas sp. 31A) <- R.B. Habibian

NCBI tax ID(s): 285 (species)

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General

@ref: 2815

BacDive-ID: 2914

DSM-Number: 6781

keywords: 16S sequence, Bacteria, human pathogen

description: Comamonas testosteroni 31A is a human pathogen that was isolated from soil from a greenhouse.

NCBI tax id

  • NCBI tax id: 285
  • Matching level: species

strain history

  • @ref: 2815
  • history: <- D. Jendrossek (Comamonas sp. 31A) <- R.B. Habibian

doi: 10.13145/bacdive2914.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Comamonas
  • species: Comamonas testosteroni
  • full scientific name: Comamonas testosteroni (Marcus and Talalay 1956) Tamaoka et al. 1987

  • synonyms

    • @ref: 20215
    • synonym: Pseudomonas testosteroni

@ref: 2815

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Comamonas

species: Comamonas testosteroni

full scientific name: Comamonas testosteroni (Marcus and Talalay 1956) Tamaoka et al. 1987 emend. Willems et al. 1991

strain designation: 31A

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2815MEDIUM WITH POLYHYDROXYBUTYRIC ACID AS CARBON SOURCE (DSMZ Medium 474)yeshttps://mediadive.dsmz.de/medium/474Name: MEDIUM WITH POLYHYDROXYBUTYRIC ACID AS CARBON SOURCE (DSMZ Medium 474) Composition: Agar 16.0 g/l Na2HPO4 0.244 g/l poly-ß-hydroxybutyric acid 0.198 g/l KH2PO4 0.152 g/l (NH4)2SO4 0.05 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.005 g/l EDTA 0.0005 g/l FeSO4 x 7 H2O 0.0002 g/l H3BO3 3e-05 g/l CoCl2 x 6 H2O 2e-05 g/l ZnSO4 x 7 H2O 1e-05 g/l Na2MoO4 x 2 H2O 3e-06 g/l MnCl2 x 4 H2O 3e-06 g/l NiCl2 x 6 H2O 2e-06 g/l CuCl2 x 2 H2O 1e-06 g/l Distilled water
2815REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a)yeshttps://mediadive.dsmz.de/medium/220aName: REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a) Composition: Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

culture temp

  • @ref: 2815
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

compound production

  • @ref: 2815
  • compound: poly(3-hydroxybutyrate) depolymerase

Isolation, sampling and environmental information

isolation

  • @ref: 2815
  • sample type: soil from a greenhouse
  • geographic location: Göttingen
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Greenhouse
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_294.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_202;97_220;98_249;99_294&stattab=map
  • Last taxonomy: Comamonas
  • 16S sequence: AM113745
  • Sequence Identity:
  • Total samples: 45208
  • soil counts: 5571
  • aquatic counts: 17183
  • animal counts: 18603
  • plant counts: 3851

Safety information

risk assessment

  • @ref: 2815
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Comamonas testosteroni partial 16S rRNA gene, strain DSM 6781
  • accession: AM113745
  • length: 1465
  • database: nuccore
  • NCBI tax ID: 285

External links

@ref: 2815

culture collection no.: DSM 6781

straininfo link

  • @ref: 72437
  • straininfo: 48290

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2815Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6781)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6781
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72437Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48290.1StrainInfo: A central database for resolving microbial strain identifiers