Strain identifier
BacDive ID: 2862
Type strain: 
Species: Tindallia texcoconensis
Strain Designation: IMP-300
Strain history: M.-L. Fardeau IMP-300.
NCBI tax ID(s): 361365 (species)
version 8.1 (current version)
General
@ref: 7262
BacDive-ID: 2862
DSM-Number: 18041
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Tindallia texcoconensis IMP-300 is an anaerobe, mesophilic bacterium that was isolated from groundwater sample.
NCBI tax id
- NCBI tax id: 361365
- Matching level: species
strain history
| @ref | history |
|---|---|
| 7262 | <- D. Alazard, Lab. Microbiol. de l'IRD, Univ. de Provence et de la Méditerranée, Marseille, France <- C. Badillo |
| 67770 | M.-L. Fardeau IMP-300. |
doi: 10.13145/bacdive2862.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Tindallia
- species: Tindallia texcoconensis
- full scientific name: Tindallia texcoconensis Alazard et al. 2009
@ref: 7262
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Tindallia
species: Tindallia texcoconensis
full scientific name: Tindallia texcoconensis Alazard et al. 2009
strain designation: IMP-300
type strain: yes
Culture and growth conditions
culture medium
- @ref: 7262
- name: TINDALLIA TEXCOCOENSIS MEDIUM (DSMZ Medium 1223)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1223
- composition: Name: TINDALLIA TEXCOCOENSIS MEDIUM (DSMZ Medium 1223) Composition: NaHCO3 20.0 g/l Peptone 5.0 g/l Na2CO3 3.0 g/l NH4Cl 1.0 g/l MgCl2 x 6 H2O 0.5 g/l Cysteine-HCl 0.5 g/l Yeast extract 0.5 g/l Na2S x 9 H2O 0.4 g/l K2HPO4 0.3 g/l KCl 0.1 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l Resazurin 0.01 g/l MnSO4 x H2O 0.005 g/l CoSO4 x 7 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l Na2MoO4 x 2 H2O 0.0001 g/l CuSO4 x 5 H2O 0.0001 g/l H3BO3 0.0001 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7262 | positive | growth | 35 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 7262
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 7262 | groundwater sample | zone of the former soda lake Texcoco | Mexico | MEX | North America |
| 67770 | Groundwater sample near the athalassic saline alkaline Texcoco lake in Mexico |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Groundwater
taxonmaps
- @ref: 69479
- File name: preview.99_67019.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1869;96_8070;97_9711;98_23698;99_67019&stattab=map
- Last taxonomy: Tindallia texcoconensis subclade
- 16S sequence: DQ234901
- Sequence Identity:
- Total samples: 23
- soil counts: 1
- aquatic counts: 12
- animal counts: 9
- plant counts: 1
Safety information
risk assessment
- @ref: 7262
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7262
- description: Tindallia texcocoense strain IMP-300 16S ribosomal RNA gene, partial sequence
- accession: DQ234901
- length: 1494
- database: ena
- NCBI tax ID: 361365
GC content
| @ref | GC-content |
|---|---|
| 7262 | 40.0 |
| 67770 | 40 |
External links
@ref: 7262
culture collection no.: DSM 18041, JCM 13990
straininfo link
- @ref: 72386
- straininfo: 402624
literature
- topic: Phylogeny
- Pubmed-ID: 16932842
- title: Tindallia texcoconensis sp. nov., a new haloalkaliphilic bacterium isolated from lake Texcoco, Mexico.
- authors: Alazard D, Badillo C, Fardeau ML, Cayol JL, Thomas P, Roldan T, Tholozan JL, Ollivier B
- journal: Extremophiles
- DOI: 10.1007/s00792-006-0006-5
- year: 2006
- mesh: Alkalies/*metabolism, Base Composition, Carbonates/metabolism, DNA, Bacterial/analysis, Fatty Acids/metabolism, Fermentation, Fresh Water/chemistry/*microbiology, Genotype, Gram-Positive Asporogenous Rods/*classification/genetics/growth & development/*isolation & purification/metabolism, Hydrogen-Ion Concentration, Mexico, Phenotype, Phylogeny, RNA, Ribosomal, 16S/analysis/genetics, Ribotyping, Sodium Chloride/metabolism, Temperature, *Water Microbiology
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7262 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18041) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18041 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 72386 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID402624.1 | StrainInfo: A central database for resolving microbial strain identifiers |