Strain identifier
BacDive ID: 2810
Type strain: 
Species: Paeniclostridium ghonii
Strain Designation: PEV
Strain history: ATCC 25757 <-- L. DS. Smith VPI 4897.
NCBI tax ID(s): 29358 (species)
version 8.1 (current version)
General
@ref: 5685
BacDive-ID: 2810
DSM-Number: 15049
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Paeniclostridium ghonii PEV is an anaerobe, mesophilic bacterium of the family Clostridiaceae.
NCBI tax id
- NCBI tax id: 29358
- Matching level: species
strain history
| @ref | history |
|---|---|
| 5685 | <- JCM <- ATCC <- L. D. Smith, VPI <- A. Prevot; PEV |
| 67770 | ATCC 25757 <-- L. DS. Smith VPI 4897. |
doi: 10.13145/bacdive2810.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Paeniclostridium
- species: Paeniclostridium ghonii
- full scientific name: Paeniclostridium ghonii (Prévot 1938) Sasi Jyothsna et al. 2016
synonyms
@ref synonym 20215 Clostridium ghoni 20215 Clostridium ghonii
@ref: 5685
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Paeniclostridium
species: Paeniclostridium ghonii
full scientific name: Paeniclostridium ghonii (Prévot 1938) Sasi Jyothsna et al. 2016
strain designation: PEV
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5685
- name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
- growth: yes
- link: https://mediadive.dsmz.de/medium/110
- composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5685 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 5685
- oxygen tolerance: anaerobe
Safety information
risk assessment
- @ref: 5685
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | [Clostridium] ghonii gene for 16S ribosomal RNA, partial sequence, strain: JCM 1400 | AB542933 | 1463 | ena | 29358 |
| 5685 | Clostridium ghonii 16S rRNA gene, strain NCIMB 10636 | X73451 | 1501 | ena | 29358 |
Genome sequences
- @ref: 66792
- description: Paeniclostridium ghonii DSM 15049
- accession: 2928400839
- assembly level: draft
- database: img
- NCBI tax ID: 29358
GC content
- @ref: 5685
- GC-content: 27
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 5685
culture collection no.: DSM 15049, ATCC 25757, JCM 1400, VPI 4897, CCUG 9282, BCRC 14548, NCIMB 10636
straininfo link
- @ref: 72336
- straininfo: 38656
literature
- topic: Phylogeny
- Pubmed-ID: 26738915
- title: Paraclostridium benzoelyticum gen. nov., sp. nov., isolated from marine sediment and reclassification of Clostridium bifermentans as Paraclostridium bifermentans comb. nov. Proposal of a new genus Paeniclostridium gen. nov. to accommodate Clostridium sordellii and Clostridium ghonii.
- authors: Sasi Jyothsna TS, Tushar L, Sasikala C, Ramana CV
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.000874
- year: 2016
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5685 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15049) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15049 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 72336 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID38656.1 | StrainInfo: A central database for resolving microbial strain identifiers |