Strain identifier
BacDive ID: 2756
Type strain: 
Species: Clostridium intestinale
Strain Designation: RC
Strain history: <- H. L. Drake, Dept. Ecological Microbiology, Univ. Bayreuth, Germany; RC <- A. Gößner {2004}
NCBI tax ID(s): 36845 (species)
General
@ref: 6523
BacDive-ID: 2756
DSM-Number: 16614
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Clostridium intestinale RC is an anaerobe, mesophilic bacterium that was isolated from root of Juncus roemerianus.
NCBI tax id
- NCBI tax id: 36845
- Matching level: species
strain history
- @ref: 6523
- history: <- H. L. Drake, Dept. Ecological Microbiology, Univ. Bayreuth, Germany; RC <- A. Gößner {2004}
doi: 10.13145/bacdive2756.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium intestinale
- full scientific name: Clostridium intestinale corrig. Lee et al. 1989
synonyms
- @ref: 20215
- synonym: Clostridium intestinalis
@ref: 6523
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium intestinale
full scientific name: Clostridium intestinale Lee et al. 1989
strain designation: RC
type strain: no
Culture and growth conditions
culture medium
- @ref: 6523
- name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)
- growth: yes
- link: https://mediadive.dsmz.de/medium/339
- composition: Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 6523
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 6523
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 6523
- sample type: root of Juncus roemerianus
- host species: Juncus roemerianus
- geographic location: South Carolina
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
taxonmaps
- @ref: 69479
- File name: preview.99_7089.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_3322;97_4075;98_5212;99_7089&stattab=map
- Last taxonomy: Clostridium intestinale subclade
- 16S sequence: AM158323
- Sequence Identity:
- Total samples: 5947
- soil counts: 990
- aquatic counts: 625
- animal counts: 4023
- plant counts: 309
Safety information
risk assessment
- @ref: 6523
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6523
- description: Clostridium intestinale partial 16S rRNA gene, strain RC
- accession: AM158323
- length: 1480
- database: ena
- NCBI tax ID: 36845
External links
@ref: 6523
culture collection no.: DSM 16614
straininfo link
- @ref: 72286
- straininfo: 404690
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 6523 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16614) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16614 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 72286 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID404690.1 | StrainInfo: A central database for resolving microbial strain identifiers |