Strain identifier

BacDive ID: 2719

Type strain: No

Species: Clostridium subterminale

Strain Designation: SB4

Strain history: <- ATCC <- H.A. Barker, SB4 <- O.M. Rochovansky

NCBI tax ID(s): 1550 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 1181

BacDive-ID: 2719

DSM-Number: 2636

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Clostridium subterminale SB4 is an anaerobe, mesophilic bacterium of the family Clostridiaceae.

NCBI tax id

  • NCBI tax id: 1550
  • Matching level: species

strain history

  • @ref: 1181
  • history: <- ATCC <- H.A. Barker, SB4 <- O.M. Rochovansky

doi: 10.13145/bacdive2719.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium subterminale
  • full scientific name: Clostridium subterminale (Hall and Whitehead 1927) Spray 1948 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus subterminalis

@ref: 1181

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridium

species: Clostridium subterminale

full scientific name: Clostridium subterminale (Hall and Whitehead 1927) Spray 1948

strain designation: SB4

type strain: no

Culture and growth conditions

culture medium

  • @ref: 1181
  • name: CHOPPED MEAT MEDIUM (DSMZ Medium 78)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/78
  • composition: Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water

culture temp

  • @ref: 1181
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 1181
  • oxygen tolerance: anaerobe

compound production

  • @ref: 1181
  • compound: glutamate dehydrogenase

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_39302.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_2305;97_2799;98_3476;99_39302&stattab=map
  • Last taxonomy: Clostridium
  • 16S sequence: AF241842
  • Sequence Identity:
  • Total samples: 482
  • soil counts: 110
  • aquatic counts: 54
  • animal counts: 294
  • plant counts: 24

Safety information

risk assessment

  • @ref: 1181
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 1181
  • description: Clostridium subterminale isolate DSM 2636 16S ribosomal RNA gene, partial sequence
  • accession: AF241842
  • length: 1504
  • database: ena
  • NCBI tax ID: 1550

External links

@ref: 1181

culture collection no.: DSM 2636, ATCC 29748

straininfo link

  • @ref: 72247
  • straininfo: 39693

literature

  • topic: Metabolism
  • Pubmed-ID: 11760953
  • title: Metabolism of cinnamic acids by some Clostridiales and emendation of the descriptions of Clostridium aerotolerans, Clostridium celerecrescens and Clostridium xylanolyticum.
  • authors: Chamkha M, Garcia JL, Labat M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-51-6-2105
  • year: 2001
  • mesh: Bacterial Typing Techniques, Cinnamates/*metabolism, Clostridium/*classification/growth & development/*metabolism, Culture Media, Glucose/metabolism
  • topic2: Cultivation

Reference

@idauthorscataloguedoi/urltitle
1181Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2636)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2636
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72247Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID39693.1StrainInfo: A central database for resolving microbial strain identifiers