Strain identifier
BacDive ID: 2689
Type strain: 
Species: Clostridium sp.
Strain history: <- J. H. Thiele, University of Otago, Waste Technology Research Group, Dunedin, New Zealand; LIP1 <- G. N. Jarvis and J. H. Thiele {1992}
NCBI tax ID(s): 1506 (species)
General
@ref: 3994
BacDive-ID: 2689
DSM-Number: 10643
keywords: 16S sequence, Bacteria, anaerobe
description: Clostridium sp. DSM 10643 is an anaerobe bacterium that was isolated from anaerobic digestor operated with solid meat waste.
NCBI tax id
- NCBI tax id: 1506
- Matching level: species
strain history
- @ref: 3994
- history: <- J. H. Thiele, University of Otago, Waste Technology Research Group, Dunedin, New Zealand; LIP1 <- G. N. Jarvis and J. H. Thiele {1992}
doi: 10.13145/bacdive2689.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium sp.
- full scientific name: Clostridium Prazmowski 1880 (Approved Lists 1980)
synonyms
@ref synonym 20215 Tyzzerella 20215 Pseudoclostridium 20215 Lachnoclostridium 20215 Anaerobacter 20215 Inflabilis
@ref: 3994
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium sp.
full scientific name: Clostridium sp.
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 3994 | COLUMBIA BLOOD AGAR (DSMZ Medium 429) | yes | https://mediadive.dsmz.de/medium/429 | Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base |
| 3994 | BHI MEDIUM FOR STRICT ANAEROBES (DSMZ Medium 215c) | yes | https://mediadive.dsmz.de/medium/215c | Name: BHI MEDIUM FOR STRICT ANAEROBES (DSMZ Medium 215c; with strain-specific modifications) Composition: Brain heart infusion 37.0 g/l Na2S x 9 H2O 0.25 g/l L-Cysteine HCl x H2O 0.25 g/l Glycerol Distilled water |
culture temp
- @ref: 3994
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 3994
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 3994
- sample type: anaerobic digestor operated with solid meat waste
- geographic location: Otago
- country: New Zealand
- origin.country: NZL
- continent: Australia and Oceania
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Biodegradation | #Anaerobic digestor |
| #Engineered | #Waste | #Solid animal waste |
| #Condition | #Anoxic (anaerobic) |
Sequence information
16S sequences
- @ref: 3994
- description: Clostridium sp. Lip1 16S rRNA gene
- accession: AJ002591
- length: 1469
- database: nuccore
- NCBI tax ID: 1506
External links
@ref: 3994
culture collection no.: DSM 10643, LIP 1
straininfo link
- @ref: 72217
- straininfo: 87922
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 3994 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10643) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10643 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 72217 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID87922.1 | StrainInfo: A central database for resolving microbial strain identifiers |