Strain identifier

BacDive ID: 2657

Type strain: Yes

Species: Lacrimispora saccharolytica

Strain Designation: WM1

Strain history: <- W. D. Murray, National Research Council, Ottawa, Canada; WM1 <- W. D. Murray; {1980}

NCBI tax ID(s): 84030 (species)

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General

@ref: 1118

BacDive-ID: 2657

DSM-Number: 2544

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Lacrimispora saccharolytica WM1 is an anaerobe, mesophilic bacterium that was isolated from sewage sludge.

NCBI tax id

  • NCBI tax id: 84030
  • Matching level: species

strain history

  • @ref: 1118
  • history: <- W. D. Murray, National Research Council, Ottawa, Canada; WM1 <- W. D. Murray; {1980}

doi: 10.13145/bacdive2657.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Lachnospiraceae
  • genus: Lacrimispora
  • species: Lacrimispora saccharolytica
  • full scientific name: Lacrimispora saccharolytica (Murray et al. 1982) Haas and Blanchard 2020

  • synonyms

    • @ref: 20215
    • synonym: Clostridium saccharolyticum

@ref: 1118

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Lachnospiraceae

genus: Lacrimispora

species: Lacrimispora saccharolytica

full scientific name: Lacrimispora saccharolytica (Murray et al. 1982) Haas and Blanchard 2020

strain designation: WM1

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1118PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium104c.pdf
1118CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)yeshttps://mediadive.dsmz.de/medium/110aName: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Yeast extract 5.0 g/l K2HPO4 5.0 g/l D-Glucose 4.0 g/l Na2CO3 1.5 g/l Cellobiose 1.0 g/l Maltose 1.0 g/l Starch 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l NaOH Distilled water

culture temp

  • @ref: 1118
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
1118anaerobe
125439anaerobe98.1

spore formation

  • @ref: 125439
  • spore formation: yes
  • confidence: 91.8

Isolation, sampling and environmental information

isolation

  • @ref: 1118
  • sample type: sewage sludge
  • geographic location: Ottawa
  • country: Canada
  • origin.country: CAN
  • continent: North America

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Waste
  • Cat3: #Sewage sludge

taxonmaps

  • @ref: 69479
  • File name: preview.99_2779.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_286;97_316;98_1698;99_2779&stattab=map
  • Last taxonomy: Lacrimispora saccharolytica
  • 16S sequence: NR_102852
  • Sequence Identity:
  • Total samples: 1764
  • soil counts: 348
  • aquatic counts: 397
  • animal counts: 834
  • plant counts: 185

Safety information

risk assessment

  • @ref: 1118
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
1118Lacrimispora saccharolytica strain WM1 16S ribosomal RNA, partial sequenceNR_1028521519nuccore84030
124043Clostridium saccharolyticum 16S rRNA gene, partial, strain DSM 2544Y181851499nuccore610130

Genome sequences

  • @ref: 66792
  • description: Lachnoclostridium saccharolyticum WM1, DSM 2544
  • accession: 648028018
  • assembly level: complete
  • database: img
  • NCBI tax ID: 610130

GC content

  • @ref: 1118
  • GC-content: 45.0
  • method: sequence analysis

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidence
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes91.8
125439BacteriaNetmotilityAbility to perform movementyes87
125439BacteriaNetgram_stainReaction to gram-stainingvariable80.3
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthanaerobe98.1

External links

@ref: 1118

culture collection no.: DSM 2544, ATCC 35040, NRC 2533

straininfo link

  • @ref: 72186
  • straininfo: 125844

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1118Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2544)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2544
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72186Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID125844.1StrainInfo: A central database for resolving microbial strain identifiers
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1