Strain identifier

BacDive ID: 256

Type strain: No

Species: Aeromonas veronii

Strain history: CIP <- 2002, Y.S. Shouche, Pune Univ., Pune, India, Aeromonas culicicola <- V. Pidiyar, NCCS, Pune, India

NCBI tax ID(s): 654 (species)

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General

@ref: 7118

BacDive-ID: 256

DSM-Number: 17676

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, human pathogen

description: Aeromonas veronii CCUG 56447 is an aerobe, Gram-negative human pathogen that was isolated from mid gut of Culex quinquifasciatus.

NCBI tax id

  • NCBI tax id: 654
  • Matching level: species

strain history

@refhistory
7118<- Y. Shouche, NCCS, Natl. Centre for Cell Science, Pune <- V. Pidiyar
123819CIP <- 2002, Y.S. Shouche, Pune Univ., Pune, India, Aeromonas culicicola <- V. Pidiyar, NCCS, Pune, India

doi: 10.13145/bacdive256.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Aeromonas
  • species: Aeromonas veronii
  • full scientific name: Aeromonas veronii Hickman-Brenner et al. 1988

  • synonyms

    • @ref: 20215
    • synonym: Aeromonas culicicola

@ref: 7118

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Aeromonas

species: Aeromonas veronii

full scientific name: Aeromonas veronii Hickman-Brenner et al. 1988

type strain: no

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
123819negativerod-shapedyes
69480yes90.533
69480negative99.939

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7118LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://mediadive.dsmz.de/medium/381Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
7118TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
38230MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123819CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
7118positivegrowth30
38230positivegrowth30
60962positivegrowth30
123819positivegrowth10-41
123819nogrowth5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
60962aerobe
123819facultative anaerobe

spore formation

@refspore formationconfidence
69480no90.212
69481no100

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
68368L-arabinose-fermentation30849
68368amygdalin-fermentation27613
68368melibiose-fermentation28053
68368sucrose+fermentation17992
68368L-rhamnose-fermentation62345
68368sorbitol-fermentation30911
68368myo-inositol-fermentation17268
68368D-mannitol+fermentation16899
68368D-glucose+fermentation17634
68368gelatin+hydrolysis5291
68368tryptophan+energy source27897
68368urea-hydrolysis16199
68368citrate+assimilation16947
68368ornithine-degradation18257
68368lysine+degradation25094
68368arginine+hydrolysis29016
123819mannitol+fermentation29864
123819citrate+carbon source16947
123819glucose+fermentation17234
123819lactose-fermentation17716
123819nitrate+reduction17632
123819nitrite+reduction16301
123819malonate-assimilation15792
123819sodium thiosulfate-builds gas from132112
123819glucose+degradation17234
68374ornithine-degradation18257
68374arginine+hydrolysis29016
68374lysine-degradation25094
68374urea-hydrolysis16199
68374L-arabitol-builds acid from18403
68374D-galacturonic acid-builds acid from18024
68374Potassium 5-ketogluconate-builds acid from
68374D-mannitol-builds acid from16899
68374maltose+builds acid from17306
68374ribitol-builds acid from15963
68374palatinose-builds acid from18394
68374malonate-assimilation15792
68374tryptophan+energy source27897
68374D-glucose+builds acid from17634
68374sucrose+builds acid from17992
68374L-arabinose-builds acid from30849
68374D-arabitol-builds acid from18333
68374trehalose+builds acid from27082
68374L-rhamnose-builds acid from62345
68374myo-inositol-builds acid from17268
68374cellobiose-builds acid from17057
68374sorbitol-builds acid from30911

antibiotic resistance

  • @ref: 123819
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6837435581indoleyes
6836835581indoleyes
6836816136hydrogen sulfideno
12381935581indoleyes

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6837435581indole+
6836835581indole+
12381915688acetoin+
12381917234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)+
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase+
68374alpha-galactosidase+3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase+3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase-3.2.1.21
68374lipase+
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase+3.5.3.6
68374ornithine decarboxylase-4.1.1.17
68368cytochrome oxidase+1.9.3.1
68368gelatinase+
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
123819oxidase+
123819beta-galactosidase+3.2.1.23
123819alcohol dehydrogenase+1.1.1.1
123819gelatinase+
123819amylase+
123819DNase+
123819caseinase+3.4.21.50
123819catalase+1.11.1.6
123819tween esterase+
123819lecithinase+
123819lipase+
123819lysine decarboxylase-4.1.1.18
123819ornithine decarboxylase-4.1.1.17
123819phenylalanine ammonia-lyase+4.3.1.24
123819protease+
123819tryptophan deaminase+
123819urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123819-+++++--+-++-+-+-+--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
60962+++-+---+++++---+---+
7118+++-+--+/-++/-+++---+---+

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
123819+---+----++++----+---+-----+--++---++---------+--

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
60962-+-----+---+----+++++---++----+-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123819--++---+-+---+---+-+-------------+---------------++--+-----++---------------+--++-+---+--++++++--+-

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentsampling dateisolation date
7118mid gut of Culex quinquifasciatusCulex quinquefasciatusPuneIndiaINDAsia
60962Mosquito, midgutPuneIndiaINDAsia1997
123819Animal, Mosquito, midgutPuneIndiaINDAsia1997

isolation source categories

Cat1Cat2Cat3
#Host#Arthropoda#Insecta
#Host Body-Site#Gastrointestinal tract

taxonmaps

  • @ref: 69479
  • File name: preview.99_537.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_15;97_15;98_18;99_537&stattab=map
  • Last taxonomy: Aeromonas
  • 16S sequence: AF170914
  • Sequence Identity:
  • Total samples: 1750
  • soil counts: 68
  • aquatic counts: 1144
  • animal counts: 488
  • plant counts: 50

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
7118yesyes2Risk group (German classification)
1238191Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Aeromonas culicicola 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF407222467nuccore654
20218Aeromonas culicicola 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF407223537nuccore654
20218Aeromonas culicicola 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF407224523nuccore654
20218Aeromonas culicicola 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF407225480nuccore654
20218Aeromonas culicicola 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF407226525nuccore654
20218Aeromonas culicicola 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF407227524nuccore654
20218Aeromonas culicicola 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF407228525nuccore654
20218Aeromonas culicicola 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF407229539nuccore654
20218Aeromonas culicicola 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF407230533nuccore654
20218Aeromonas culicicola 16S-23S ribosomal RNA intergenic spacer, complete sequenceAF407231483nuccore654
20218Aeromonas culicicola strain MTCC 3249 substrain SH 16S ribosomal RNA gene, partial sequenceAY1309911370nuccore654
20218Aeromonas culicicola strain MTCC 3249 substrain SLH 16S ribosomal RNA gene, partial sequenceAY1309921370nuccore654
7118Aeromonas culicicola strain MTCC 3249 16S ribosomal RNA gene, partial sequenceAF1709141532nuccore654
124043Aeromonas culicicola strain CECT 5761 16S ribosomal RNA gene, partial sequence.AY3476801503nuccore654

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aeromonas veronii CIP 107763GCA_000820285contigncbi654
66792Aeromonas veronii strain CIP 107763654.25wgspatric654
66792Aeromonas veronii CIP 1077632645727532draftimg654

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno99.939no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.979yes
69480spore-formingspore-formingAbility to form endo- or exosporesno90.212no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no71.891no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno100yes
69480flagellatedmotile2+Ability to perform flagellated movementyes90.533no

External links

@ref: 7118

culture collection no.: CCUG 56447, CIP 107763, NCIM 5147, CCM 7323, CECT 5761, DSM 17676, MTCC 3249, NCIMB 5147

straininfo link

  • @ref: 69938
  • straininfo: 88445

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12361279Aeromonas culicicola sp. nov., from the midgut of Culex quinquefasciatus.Pidiyar V, Kaznowski A, Narayan NB, Patole M, Shouche YSInt J Syst Evol Microbiol10.1099/00207713-52-5-17232002Aedes/microbiology, Aeromonas/*classification/genetics/*isolation & purification/pathogenicity, Animals, Base Composition, Culex/*microbiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Digestive System/microbiology, Female, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species SpecificityGenetics
Phylogeny12866846Phylogenetic affiliation of Aeromonas culicicola MTCC 3249(T) based on gyrB gene sequence and PCR-amplicon sequence analysis of cytolytic enterotoxin gene.Pidiyar VJ, Jangid K, Dayananda KM, Kaznowski A, Gonzalez JM, Patole MS, Shouche YSSyst Appl Microbiol10.1078/0723202033223460472003Aeromonas/*classification/genetics, Bacterial Proteins/*genetics, Bacterial Typing Techniques, DNA Gyrase/*genetics, DNA, Bacterial/genetics, Enterotoxins/*genetics, *Genes, Bacterial, Nucleic Acid Amplification Techniques, Nucleic Acid Hybridization, Phylogeny, Polymerase Chain Reaction, Ribotyping, Sequence Homology, Nucleic Acid, Species SpecificityTranscriptome
Genetics14509830Analysis of 16S-23S intergenic spacer regions and rrn operon copy number of Aeromonas culicicola MTCC 3249T.Pidiyar VJ, Jangid K, Patole MS, Shouche YSDNA Seq10.1080/10425170310001012572003Aeromonas/*genetics, Base Sequence, Blotting, Southern, DNA Primers, DNA, Intergenic/*genetics, Molecular Sequence Data, Operon/*genetics, Polymorphism, Restriction Fragment Length, RNA, Ribosomal/genetics, Sequence Alignment, Sequence Analysis, DNATranscriptome
Genetics22666003A variant quorum sensing system in Aeromonas veronii MTCC 3249.Jangid K, Parameswaran PS, Shouche YSSensors (Basel)10.3390/s1204038142012Aeromonas/genetics/*physiology, Base Sequence, Blotting, Southern, Chromatography, Thin Layer, DNA Primers, DNA, Bacterial/genetics/isolation & purification, Genes, Bacterial, Molecular Sequence Data, Polymerase Chain Reaction, *Quorum Sensing, Sequence Homology, Nucleic Acid, Tandem Mass SpectrometryProteome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7118Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17676)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17676
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38230Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5234
60962Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 56447)https://www.ccug.se/strain?id=56447
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
68374Automatically annotated from API ID32E
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69938Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID88445.1StrainInfo: A central database for resolving microbial strain identifiers
123819Curators of the CIPCollection of Institut Pasteur (CIP 107763)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107763
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy