Strain identifier
BacDive ID: 2504
Type strain: 
Species: Natronincola peptidivorans
Strain Designation: Z-7031
Strain history: <- T.N. Zhilina; Z-7031
NCBI tax ID(s): 1122597 (strain), 426128 (species)
version 8.1 (current version)
General
@ref: 7811
BacDive-ID: 2504
DSM-Number: 18979
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile
description: Natronincola peptidivorans Z-7031 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from soda lake.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1122597 | strain |
| 426128 | species |
strain history
- @ref: 7811
- history: <- T.N. Zhilina; Z-7031
doi: 10.13145/bacdive2504.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Natronincola
- species: Natronincola peptidivorans
- full scientific name: Natronincola peptidivorans corrig. Zhilina et al. 2009
synonyms
- @ref: 20215
- synonym: Natronincola peptidovorans
@ref: 7811
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Natronincola
species: Natronincola peptidivorans
full scientific name: Natronincola peptidivorans Zhilina et al. 2009
strain designation: Z-7031
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 95.96 | |
| 69480 | 99.72 | positive |
Culture and growth conditions
culture medium
- @ref: 7811
- name: ANAEROBACILLUS MEDIUM (DSMZ Medium 898a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/898a
- composition: Name: ANAEROBACILLUS MEDIUM (DSMZ Medium 898a; with strain-specific modifications) Composition: NaCl 14.9701 g/l NaHCO3 9.98004 g/l Na2CO3 2.75449 g/l Yeast extract 1.99601 g/l NH4Cl 0.998004 g/l Na2S x 9 H2O 0.499002 g/l KCl 0.199601 g/l KH2PO4 0.199601 g/l MgCl2 x 6 H2O 0.0998004 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l Pyridoxine hydrochloride 9.98004e-05 g/l MnCl2 x 4 H2O 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l Thiamine HCl 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l Folic acid 1.99601e-05 g/l Biotin 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water
culture temp
- @ref: 7811
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 7811 | anaerobe | |
| 69480 | anaerobe | 99.682 |
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 99.644
Isolation, sampling and environmental information
isolation
- @ref: 7811
- sample type: soda lake
- geographic location: Transbaikal Region, Buryatia, Lake Verkhnee Beloe
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Condition | #Alkaline |
taxonmaps
- @ref: 69479
- File name: preview.99_140145.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_191;96_53895;97_69510;98_93173;99_140145&stattab=map
- Last taxonomy: Natronincola peptidivorans subclade
- 16S sequence: EF382661
- Sequence Identity:
- Total samples: 56
- soil counts: 18
- aquatic counts: 30
- animal counts: 4
- plant counts: 4
Safety information
risk assessment
- @ref: 7811
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7811
- description: Natronincola peptidovorans strain Z-7031 16S ribosomal RNA gene, partial sequence
- accession: EF382661
- length: 1448
- database: ena
- NCBI tax ID: 1122597
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Natronincola peptidivorans DSM 18979 | GCA_900111615 | scaffold | ncbi | 426128 |
| 66792 | Natronincola peptidivorans strain DSM 18979 | 426128.6 | wgs | patric | 426128 |
| 66792 | Natronincola peptidivorans DSM 18979 | 2599185224 | draft | img | 426128 |
GC content
- @ref: 7811
- GC-content: 35.5
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 88 | no |
| motile | yes | 83.019 | no |
| flagellated | no | 57.704 | no |
| gram-positive | yes | 54.021 | no |
| anaerobic | yes | 98.406 | yes |
| aerobic | no | 98.235 | no |
| halophile | no | 83.233 | no |
| spore-forming | yes | 90.245 | no |
| glucose-ferment | yes | 55.413 | no |
| thermophile | no | 95.107 | no |
| glucose-util | yes | 87.703 | no |
External links
@ref: 7811
culture collection no.: DSM 18979, VKM B-2503
straininfo link
- @ref: 72040
- straininfo: 407223
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 7811 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18979) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18979 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 72040 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID407223.1 | StrainInfo: A central database for resolving microbial strain identifiers |