Strain identifier

BacDive ID: 2502

Type strain: Yes

Species: Natronincola histidinovorans

Strain Designation: Z-7940

Strain history: <- T. N. Zhilina; Z-7940

NCBI tax ID(s): 89959 (species)

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General

@ref: 4354

BacDive-ID: 2502

DSM-Number: 11416

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Natronincola histidinovorans Z-7940 is an anaerobe, mesophilic bacterium that was isolated from soda deposit.

NCBI tax id

  • NCBI tax id: 89959
  • Matching level: species

strain history

  • @ref: 4354
  • history: <- T. N. Zhilina; Z-7940

doi: 10.13145/bacdive2502.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Natronincola
  • species: Natronincola histidinovorans
  • full scientific name: Natronincola histidinovorans corrig. Zhilina et al. 1999

  • synonyms

    • @ref: 20215
    • synonym: Natronoincola histidinovorans

@ref: 4354

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Natronincola

species: Natronincola histidinovorans

full scientific name: Natronincola histidinovorans Zhilina et al. 1999

strain designation: Z-7940

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 4354
  • name: NATRONINCOLA HISTIDINOVORANS MEDIUM (DSMZ Medium 930)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/930
  • composition: Name: NATRONINCOLA HISTIDINOVORANS MEDIUM (DSMZ Medium 930) Composition: Na2CO3 6.83 g/l Histidine 5.0 g/l NaHCO3 3.83 g/l NH4Cl 1.0 g/l KCl 0.2 g/l KH2PO4 0.2 g/l Na2S x 9 H2O 0.2 g/l Yeast extract 0.2 g/l MgCl2 x 6 H2O 0.1 g/l MgSO4 x 7 H2O 0.006 g/l Nitrilotriacetic acid 0.003 g/l NaCl 0.002 g/l Resazurin 0.001 g/l MnSO4 x H2O 0.001 g/l CoSO4 x 7 H2O 0.00036 g/l ZnSO4 x 7 H2O 0.00036 g/l FeSO4 x 7 H2O 0.0002 g/l CaCl2 x 2 H2O 0.0002 g/l NiCl2 x 6 H2O 6e-05 g/l AlK(SO4)2 x 12 H2O 4e-05 g/l CuSO4 x 5 H2O 2e-05 g/l Na2MoO4 x 2 H2O 2e-05 g/l H3BO3 2e-05 g/l Na2WO4 x 2 H2O 8e-07 g/l Na2SeO3 x 5 H2O 6e-07 g/l Distilled water

culture temp

  • @ref: 4354
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 4354
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 4354
  • sample type: soda deposit
  • geographic location: Lake Magadi
  • country: Kenya
  • origin.country: KEN
  • continent: Africa

isolation source categories

  • Cat1: #Condition
  • Cat2: #Alkaline

taxonmaps

  • @ref: 69479
  • File name: preview.99_165377.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_191;96_61928;97_80245;98_108601;99_165377&stattab=map
  • Last taxonomy: Natronincola histidinovorans subclade
  • 16S sequence: Y16716
  • Sequence Identity:
  • Total samples: 692
  • soil counts: 95
  • aquatic counts: 255
  • animal counts: 329
  • plant counts: 13

Safety information

risk assessment

  • @ref: 4354
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 4354
  • description: Natronoincola histidinovorans 16S ribosomal RNA gene (partial)
  • accession: Y16716
  • length: 1484
  • database: ena
  • NCBI tax ID: 89959

GC content

  • @ref: 4354
  • GC-content: 31.9

External links

@ref: 4354

culture collection no.: DSM 11416

straininfo link

  • @ref: 72038
  • straininfo: 87958

literature

  • topic: Phylogeny
  • Pubmed-ID: 9688817
  • title: Natronoincola histidinovorans gen. nov., sp. nov., A new alkaliphilic acetogenic anaerobe.
  • authors: Zhilina TN, Detkova EN, Rainey FA, Osipov GA, Lysenko AM, Kostrikina NA, Zavarzin GA
  • journal: Curr Microbiol
  • DOI: 10.1007/s002849900360
  • year: 1998
  • mesh: Bacteria, Anaerobic/classification/cytology/genetics/*isolation & purification/physiology, Bicarbonates/administration & dosage, Genome, Bacterial, Glutamates/metabolism, Gram-Positive Asporogenous Rods/cytology/genetics/*isolation & purification/physiology, Histidine/metabolism, Hydrogen-Ion Concentration, Phenotype, Pyruvic Acid/metabolism, Sequence Analysis, RNA, Sodium/administration & dosage
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitle
4354Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11416)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11416
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
72038Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID87958.1StrainInfo: A central database for resolving microbial strain identifiers