Strain identifier

BacDive ID: 24863

Type strain: Yes

Species: Streptomyces cuspidosporus

Strain Designation: B-79

Strain history: KCC S-0316 <-- IFO 12378 <-- E. Higashide B-79.

NCBI tax ID(s): 66882 (species)

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General

@ref: 18928

BacDive-ID: 24863

DSM-Number: 41653

keywords: 16S sequence, Bacteria, antibiotic compound production

description: Streptomyces cuspidosporus B-79 is a bacterium that produces antibiotic compounds and was isolated from soil.

NCBI tax id

  • NCBI tax id: 66882
  • Matching level: species

strain history

@refhistory
18928<- IFO <- RTCI (E. Higashide, B-79)
67770KCC S-0316 <-- IFO 12378 <-- E. Higashide B-79.

doi: 10.13145/bacdive24863.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces cuspidosporus
  • full scientific name: Streptomyces cuspidosporus Higashide et al. 1966 (Approved Lists 1980)

@ref: 18928

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces cuspidosporus

full scientific name: Streptomyces cuspidosporus Higashide et al. 1966

strain designation: B-79

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18928GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
18928STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf
18928ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperature
18928positivegrowth28
67770positivegrowth28

Physiology and metabolism

compound production

@refcompound
18928tubercidin
18928sparsomycine
18928restriction endonuclease ScnI

metabolite production

  • @ref: 67770
  • Chebi-ID: 48267
  • metabolite: tubercidin
  • production: yes

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
18928soilKyotoJapanJPNAsia
67770SoilKyotoJapanJPNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 18928
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Streptomyces cuspidosporus gene for 16S rRNA, partial sequence, strain: NBRC 12378AB1840901440nuccore66882
67770Streptomyces cuspidosporus strain IFO 12378 16S ribosomal RNA gene, partial sequenceAY5895051405nuccore66882
67770Streptomyces cuspidosporus strain AS 4.1686 16S ribosomal RNA gene, partial sequenceAY9998901405nuccore66882
124043Streptomyces cuspidosporus gene for 16S rRNA, partial sequence.AB122762564nuccore66882
124043Streptomyces cuspidosporus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4316.D44052120nuccore66882

External links

@ref: 18928

culture collection no.: DSM 41653, ATCC 33340, IFO 12378, JCM 4316, KCC S-0316, NRRL B-5620, DSM 41425, NBRC 12378, CBS 192.78, CGMCC 4.1686, KCTC 9718, VKM Ac-599

straininfo link

  • @ref: 88676
  • straininfo: 389488

Reference

@idauthorscataloguedoi/urltitle
18928Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41653)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41653
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
88676Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389488.1StrainInfo: A central database for resolving microbial strain identifiers
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy