Strain identifier
BacDive ID: 24860
Type strain: 
Species: Blastococcus mobilis
Strain Designation: AT 7(-2)-11
Strain history: H.-P. Klenk; DSMZ, Germany; AT 7(-2)-11 <-- F. Rainey.
NCBI tax ID(s): 1938746 (species)
version 9.3 (current version)
General
@ref: 18986
BacDive-ID: 24860
DSM-Number: 44272
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Blastococcus mobilis AT 7-11 is a mesophilic, Gram-positive bacterium of the family Geodermatophilaceae.
NCBI tax id
- NCBI tax id: 1938746
- Matching level: species
strain history
| @ref | history |
|---|---|
| 18986 | <- F. Rainey, AT(-2)-11 |
| 67770 | H.-P. Klenk; DSMZ, Germany; AT 7(-2)-11 <-- F. Rainey. |
doi: 10.13145/bacdive24860.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Geodermatophilales
- family: Geodermatophilaceae
- genus: Blastococcus
- species: Blastococcus mobilis
- full scientific name: Blastococcus mobilis Montero-Calasanz et al. 2023
@ref: 18986
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Geodermatophilales
family: Geodermatophilaceae
genus: Blastococcus
species: Blastococcus mobilis
full scientific name: Blastococcus mobilis Montero-Calasanz et al. 2023
strain designation: AT 7(-2)-11
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125438 | positive | 92.728 |
| 125439 | positive | 99 |
multimedia
| @ref | multimedia content | caption | intellectual property rights |
|---|---|---|---|
| 18986 | https://www.dsmz.de/microorganisms/photos/DSM_44272.jpg | Medium 714 25°C | © Leibniz-Institut DSMZ |
| 66793 | EM_DSM_44272_1.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_44272_2.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_44272_3.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_44272_4.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_44272_5.jpg | electron microscopic image | © HZI/Manfred Rohde |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 18986 | GEO-MEDIUM (DSMZ Medium 714) | yes | https://mediadive.dsmz.de/medium/714 | Name: GEO-MEDIUM (DSMZ Medium 714) Composition: Agar 15.0 g/l CaCO3 1.0 g/l Starch 1.0 g/l Glucose 1.0 g/l Yeast extract 1.0 g/l Distilled water |
| 18986 | PLATE COUNT AGAR (DSMZ Medium 464) | yes | https://mediadive.dsmz.de/medium/464 | Name: PLATE COUNT AGAR (DSMZ Medium 464) Composition: Agar 15.0 g/l Tryptone 5.0 g/l Yeast extract 2.5 g/l Dextrose 1.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 18986 | positive | growth | 25 |
| 67770 | positive | growth | 25 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 99.8
Sequence information
16S sequences
- @ref: 67770
- description: Blastococcus mobilis strain AT 7(-2)-11, DSM 44272 16S ribosomal RNA gene, partial sequence
- accession: MH479063
- length: 1368
- database: nuccore
- NCBI tax ID: 1873459
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Blastococcus mobilis DSM 44272 | GCA_900188025 | contig | ncbi | 1938746 |
| 66792 | Blastococcus sp. DSM 44272 | 1938746.3 | wgs | patric | 1938746 |
| 66792 | Blastococcus mobilis DSM 44272 | 2724679778 | draft | img | 1938746 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 92.728 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.268 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 63.714 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 86.293 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 94.883 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 64.333 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 62.2 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 70 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 99 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 99.8 |
External links
@ref: 18986
culture collection no.: DSM 44272, JCM 18933
straininfo link
- @ref: 88673
- straininfo: 403047
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 18986 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44272) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44272 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 88673 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID403047.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |