Strain identifier
BacDive ID: 24732
Type strain: 
Species: Halopolyspora alba
Strain history: <- H. Lai, Northwest A&F University,China; AFM 10251
NCBI tax ID(s): 1348092 (species)
version 8.1 (current version)
General
@ref: 21346
BacDive-ID: 24732
DSM-Number: 45976
keywords: 16S sequence, Bacteria
description: Halopolyspora alba DSM 45976 is a bacterium that was isolated from salt lake sediment.
NCBI tax id
- NCBI tax id: 1348092
- Matching level: species
strain history
- @ref: 21346
- history: <- H. Lai, Northwest A&F University,China; AFM 10251
doi: 10.13145/bacdive24732.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Halopolyspora
- species: Halopolyspora alba
- full scientific name: Halopolyspora alba Lai et al. 2014
@ref: 21346
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Actinopolysporaceae
genus: Halopolyspora
species: Halopolyspora alba
full scientific name: Halopolyspora alba Lai et al. 2014
type strain: yes
Isolation, sampling and environmental information
isolation
- @ref: 21346
- sample type: salt lake sediment
- geographic location: Dead Sea
- country: Israel
- origin.country: ISR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Aquatic | #Sediment |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_90850.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15822;96_37569;97_47770;98_62640;99_90850&stattab=map
- Last taxonomy: Halopolyspora
- 16S sequence: KF022042
- Sequence Identity:
- Total samples: 431
- soil counts: 137
- aquatic counts: 46
- animal counts: 191
- plant counts: 57
Sequence information
16S sequences
- @ref: 21346
- description: Halopolyspora alba strain AFM 10251 16S ribosomal RNA gene, partial sequence
- accession: KF022042
- length: 1511
- database: ena
- NCBI tax ID: 1348092
GC content
- @ref: 21346
- GC-content: 66.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 21346
culture collection no.: DSM 45976, CGMCC 4.7114, AFM 10251
straininfo link
- @ref: 88560
- straininfo: 404243
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24860112 | Halopolyspora alba gen. nov., sp. nov., isolated from sediment. | Lai H, Wei X, Jiang Y, Chen X, Li Q, Jiang Y, Jiang C, Gillerman L | Int J Syst Evol Microbiol | 10.1099/ijs.0.057638-0 | 2014 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Israel, Molecular Sequence Data, Oceans and Seas, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 26050246 | Bounagaea algeriensis gen. nov., sp. nov., an extremely halophilic actinobacterium isolated from a Saharan soil of Algeria. | Meklat A, Bouras N, Mokrane S, Zitouni A, Schumann P, Sproer C, Klenk HP, Sabaou N | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0500-9 | 2015 | Actinobacteria/*classification/genetics/*isolation & purification/physiology, Algeria, Arabinose/analysis, Base Composition, Cell Wall/chemistry, Cluster Analysis, Culture Media/chemistry, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Desert Climate, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Galactose/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Spores, Bacterial/growth & development, Temperature, Vitamin K 2/analysis | Genetics |
| Phylogeny | 28820085 | Reclassification of Mzabimyces algeriensis Saker et al. 2015 as Halopolyspora algeriensis comb. nov. | Lai H, Jiang Y, Saker R, Chen X, Bouras N, Klenk HP, Wei X, Jiang Y, Sabaou N | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002022 | 2017 | Actinobacteria/*classification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21346 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45976 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45976) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88560 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404243.1 |