Strain identifier

BacDive ID: 24729

Type strain: Yes

Species: Actinopolyspora lacussalsi

Strain history: <- TW Guan, Tarim Univ., Xinjiang, China

NCBI tax ID(s): 1234544 (species)

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General

@ref: 20251

BacDive-ID: 24729

DSM-Number: 46731

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, rod-shaped

description: Actinopolyspora lacussalsi DSM 46731 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from hypersaline habitat.

NCBI tax id

  • NCBI tax id: 1234544
  • Matching level: species

strain history

@refhistory
20251<- KCTC; KCTC 19657
67770KCTC 19657 <-- T.-W. Guan; Tarim Univ., China; TRM 40139.
67771<- TW Guan, Tarim Univ., Xinjiang, China

doi: 10.13145/bacdive24729.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Actinopolyspora
  • species: Actinopolyspora lacussalsi
  • full scientific name: Actinopolyspora lacussalsi Guan et al. 2013

@ref: 20251

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinopolysporaceae

genus: Actinopolyspora

species: Actinopolyspora lacussalsi

full scientific name: Actinopolyspora lacussalsi Guan et al. 2013

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotility
30906positiverod-shapedno
67771filament-shaped
67771positive

pigmentation

  • @ref: 30906
  • production: no

Culture and growth conditions

culture medium

  • @ref: 20251
  • name: CM-MEDIUM (DSMZ Medium 1504)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1504
  • composition: Name: CM MEDIUM (DSMZ Medium 1504) Composition: NaCl 150.0 g/l Agar 20.0 g/l MgSO4 x 7 H2O 10.0 g/l Yeast extract 10.0 g/l Peptone 7.5 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l FeSO4 x 7 H2O Distilled water

culture temp

@refgrowthtypetemperature
20251positivegrowth37
30906positivegrowth25-40
30906positiveoptimum35
67770positivegrowth37
67771positivegrowth37

culture pH

@refabilitytypepHPH range
30906positivegrowth6.0-9.0alkaliphile
30906positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30906aerobe
67771aerobe

spore formation

  • @ref: 30906
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
30906NaClpositivegrowth10-20 %
30906NaClpositiveoptimum12 %

observation

@refobservation
67770quinones: MK-9(H4), MK-10(H4)
67771quinones: MK-9(H4)(49.8 %), MK-10(H4)(24.2 %)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3090622599arabinose+carbon source
3090628757fructose+carbon source
3090617306maltose+carbon source
3090629864mannitol+carbon source
3090618222xylose+carbon source

enzymes

@refvalueactivityec
30906catalase+1.11.1.6
30906gelatinase+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
20251hypersaline habitatXinjiang ProvinceChinaCHNAsia
67770Hypersaline soil from the Lop Nur salt lakeXinjiang Province, north-west ChinaChinaCHNAsia
67771From saline soilChinaCHNAsia

isolation source categories

  • Cat1: #Condition
  • Cat2: #Saline

Safety information

risk assessment

  • @ref: 20251
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20251
  • description: Actinopolyspora lacussalsi strain TRM 40139 16S ribosomal RNA gene, partial sequence
  • accession: JX485633
  • length: 1402
  • database: nuccore
  • NCBI tax ID: 1234544

Genome sequences

  • @ref: 66792
  • description: Actinopolyspora lacussalsi DSM 46731
  • accession: 2923466178
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1234544

GC content

@refGC-contentmethod
2025166.4
6777066.4high performance liquid chromatography (HPLC)

External links

@ref: 20251

culture collection no.: DSM 46731, CCTCC AA 2012020, KCTC 19657, TRM 40139, JCM 31477

straininfo link

  • @ref: 88557
  • straininfo: 398486

literature

  • topic: Phylogeny
  • Pubmed-ID: 23396724
  • title: Actinopolyspora lacussalsi sp. nov., an extremely halophilic actinomycete isolated from a salt lake.
  • authors: Guan TW, Wei B, Zhang Y, Xia ZF, Che ZM, Chen XG, Zhang LL
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.047167-0
  • year: 2013
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, Vitamin K 2/analysis, *Water Microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20251Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-46731Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46731)
30906Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172723628776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
88557Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398486.1