Archive BacDiveID:10.13145/bacdive24714.20230509.8.1

Strain identifier

BacDive ID: 24714

Type strain:

Species: Marinimicrobium haloxylanilyticum

Strain Designation: SX15, XYL15

Strain history: <- K. Ingvorsen, Århus Univ., Denmark; SX15

NCBI tax ID(s): 681634 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 20905

BacDive-ID: 24714

DSM-Number: 23100

keywords: 16S sequence, Bacteria, aerobe, mesophilic

description: Marinimicrobium haloxylanilyticum SX15 is an aerobe, mesophilic bacterium that was isolated from hypersaline surface sediment.

NCBI tax id

NCBI tax id: 681634
Matching level: species

strain history

@ref: 20905
history: <- K. Ingvorsen, Århus Univ., Denmark; SX15

doi: 10.13145/bacdive24714.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Cellvibrionales
family: Cellvibrionaceae
genus: Marinimicrobium
species: Marinimicrobium haloxylanilyticum
full scientific name: Marinimicrobium haloxylanilyticum Møller et al. 2010

@ref: 20905

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Cellvibrionaceae

genus: Marinimicrobium

species: Marinimicrobium haloxylanilyticum

full scientific name: Marinimicrobium haloxylanilyticum Møller et al. 2010

strain designation: SX15, XYL15

type strain: yes

Morphology

colony morphology

@ref: 62020
incubation period: 6 days

Culture and growth conditions

culture medium

@ref: 20905
name: MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)
growth: yes
link: https://mediadive.dsmz.de/medium/514b
composition: Name: MEDIUM 514 plus additional salt (DSMZ Medium 514b; with strain-specific modifications) Composition: NaCl 80.0 g/l Agar 17.5 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
62020	positive	growth	30	mesophilic
20905	positive	growth	28	mesophilic

Physiology and metabolism

oxygen tolerance

@ref: 62020
oxygen tolerance: aerobe

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent	sampling date
20905	hypersaline surface sediment	Utah, southern part of Great Salt Lake	USA	USA	North America
62020	Hypersaline surface sediment	Utah,Great Salt Lake	USA	USA	North America	1994

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)
#Condition	#Saline

taxonmaps

@ref: 69479
File name: preview.99_15440.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_235;96_7913;97_9516;98_11685;99_15440&stattab=map
Last taxonomy: Marinimicrobium haloxylanilyticum subclade
16S sequence: GQ920839
Sequence Identity:
Total samples: 691
soil counts: 31
aquatic counts: 524
animal counts: 131
plant counts: 5

Sequence information

16S sequences

@ref: 20905
description: Marinimicrobium haloxylanilyticum strain SX15 16S ribosomal RNA gene, partial sequence
accession: GQ920839
length: 1486
database: ena
NCBI tax ID: 681634

GC content

@ref: 20905
GC-content: 60±0.5
method: high performance liquid chromatography (HPLC)

External links

@ref: 20905

culture collection no.: DSM 23100, CCUG 59572

literature

topic: Phylogeny
Pubmed-ID: 20574646
title: Marinimicrobium haloxylanilyticum sp. nov., a new moderately halophilic, polysaccharide-degrading bacterium isolated from Great Salt Lake, Utah.
authors: Moller MF, Kjeldsen KU, Ingvorsen K
journal: Antonie Van Leeuwenhoek
DOI: 10.1007/s10482-010-9472-y
year: 2010
mesh: Alteromonadaceae/*classification/cytology/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Drug Resistance, Bacterial, Genes, rRNA, Geologic Sediments/*microbiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/analysis, *Salinity, Salt Tolerance, Sodium Chloride/metabolism, Utah
topic2: Genetics

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
20905	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-23100	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23100)
62020	Curators of the CCUG		https://www.ccug.se/strain?id=59572	Culture Collection University of Gothenburg (CCUG) (CCUG 59572)
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/