Strain identifier
BacDive ID: 2471
Type strain: 
Species: Thiorhodococcus drewsii
Strain Designation: AZ1
Strain history: <- A. Zaar, Univ. Freiburg; AZ1
NCBI tax ID(s): 765913 (strain), 210408 (species)
version 8.1 (current version)
General
@ref: 5661
BacDive-ID: 2471
DSM-Number: 15006
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Thiorhodococcus drewsii AZ1 is a mesophilic bacterium that was isolated from microbial mat.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 210408 | species |
| 765913 | strain |
strain history
- @ref: 5661
- history: <- A. Zaar, Univ. Freiburg; AZ1
doi: 10.13145/bacdive2471.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Chromatiaceae
- genus: Thiorhodococcus
- species: Thiorhodococcus drewsii
- full scientific name: Thiorhodococcus drewsii Zaar et al. 2003
@ref: 5661
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Chromatiaceae
genus: Thiorhodococcus
species: Thiorhodococcus drewsii
full scientific name: Thiorhodococcus drewsii Zaar et al. 2003
strain designation: AZ1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5661
- name: PFENNIG'S MEDIUM I (modified 1988, for purple sulfur bacteria) (DSMZ Medium 28)
- growth: yes
- link: https://mediadive.dsmz.de/medium/28
- composition: Name: PFENNIG'S MEDIUM I (DSMZ Medium 28; with strain-specific modifications) Composition: NaCl 20.0 g/l NaHCO3 1.5 g/l Na2S x 9 H2O 0.592592 g/l MgSO4 x 7 H2O 0.500001 g/l Ammonium chloride 0.349999 g/l KCl 0.349999 g/l KH2PO4 0.349999 g/l CaCl2 x 2 H2O 0.25 g/l Yeast extract 0.25 g/l Ammonium acetate 0.25 g/l Pyruvic acid sodium salt 0.25 g/l Dextrose 0.25 g/l Na2-EDTA 0.003 g/l Resazurin 0.00225 g/l FeSO4 x 7 H2O 0.0011 g/l Vitamin B12 0.001 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 2 H2O 5e-05 g/l ZnCl2 4.2e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Na2MoO4 x 2 H2O 1.8e-05 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water
culture temp
- @ref: 5661
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 5661
- sample type: microbial mat
- geographic location: Massachusetts, Woods Hole, Great Sippewissett Salt Marsh
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Environmental
- Cat2: #Microbial community
- Cat3: #Microbial mat
taxonmaps
- @ref: 69479
- File name: preview.99_5799.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_169;96_2777;97_3415;98_4313;99_5799&stattab=map
- Last taxonomy: Thiorhodococcus drewsii subclade
- 16S sequence: AF525306
- Sequence Identity:
- Total samples: 312
- soil counts: 41
- aquatic counts: 237
- animal counts: 31
- plant counts: 3
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 5661 | Thiorhodococcus drewsii 16S ribosomal RNA gene, partial sequence | AF525306 | 1362 | ena | 765913 |
| 5661 | Thiorhodococcus drewsii partial 16S rRNA gene, strain DSM 15006 | FM178273 | 1464 | ena | 765913 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thiorhodococcus drewsii AZ1 | GCA_000224065 | contig | ncbi | 765913 |
| 66792 | Thiorhodococcus drewsii AZ1 | 765913.3 | wgs | patric | 765913 |
| 66792 | Thiorhodococcus drewsii AZ1 | 2510065015 | draft | img | 765913 |
GC content
- @ref: 5661
- GC-content: 64.5
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 91.747 | no |
| flagellated | yes | 71.466 | no |
| gram-positive | no | 99.075 | no |
| anaerobic | yes | 93.459 | no |
| halophile | no | 87.882 | no |
| spore-forming | no | 91.429 | no |
| glucose-util | yes | 73.001 | no |
| aerobic | no | 93.797 | no |
| thermophile | no | 98.973 | no |
| glucose-ferment | no | 80.362 | no |
External links
@ref: 5661
culture collection no.: DSM 15006
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5661 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15006) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15006 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |