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Strain identifier

BacDive ID: 24668

Type strain: Yes

Species: Azorhizobium oxalatiphilum

Strain Designation: NS12

Strain history: <- N. Sahin, Mugla University, Kötekli, Turkey; NS12 <- N. Sahin; NS12

NCBI tax ID(s): 980631 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20925

BacDive-ID: 24668

DSM-Number: 18749

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Azorhizobium oxalatiphilum NS12 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from macerated Rumex sp. petioles.

NCBI tax id

  • NCBI tax id: 980631
  • Matching level: species

strain history: <- N. Sahin, Mugla University, Kötekli, Turkey; NS12 <- N. Sahin; NS12

doi: 10.13145/bacdive24668.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Xanthobacteraceae
  • genus: Azorhizobium
  • species: Azorhizobium oxalatiphilum
  • full scientific name: Azorhizobium oxalatiphilum Lang et al. 2013

@ref: 20925

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Xanthobacteraceae

genus: Azorhizobium

species: Azorhizobium oxalatiphilum

full scientific name: Azorhizobium oxalatiphilum Lang et al. 2013

strain designation: NS12

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30820negative2.75 µm1 µmrod-shapedyes
69480negative99.061

pigmentation

  • @ref: 30820
  • production: no

Culture and growth conditions

culture medium

  • @ref: 20925
  • name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1a
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20925positivegrowth30mesophilic
30820positivegrowth10-36

Physiology and metabolism

oxygen tolerance

  • @ref: 30820
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
30820no
69480no95.714

halophily

@refsaltgrowthtested relationconcentrationhalophily levelconfidence
30820NaClpositiveoptimum2 %
69480non-halophilic98.473

observation

  • @ref: 30820
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3082016449alanine+carbon source
3082016947citrate+carbon source
3082024175galacturonate+carbon source
3082024265gluconate+carbon source
3082029987glutamate+carbon source
3082017754glycerol+carbon source
3082024996lactate+carbon source
3082025115malate+carbon source
3082017272propionate+carbon source
3082015361pyruvate+carbon source
3082030031succinate+carbon source

enzymes

@refvalueactivityec
30820catalase+1.11.1.6
30820cytochrome oxidase+1.9.3.1
30820urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 20925
  • sample type: macerated Rumex sp. petioles
  • host species: Rumex
  • geographic location: Mugla
  • country: Turkey
  • origin.country: TUR
  • continent: Asia

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

Safety information

risk assessment

  • @ref: 20925
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20925
  • description: Azorhizobium oxalatiphilum partial 16S rRNA gene, strain NS12
  • accession: FR799325
  • length: 1443
  • database: ena
  • NCBI tax ID: 980631

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Azorhizobium oxalatiphilum CCM 7897GCA_014635325scaffoldncbi980631
66792Azorhizobium oxalatiphilum strain CCM 7897980631.3wgspatric980631
66792Luteimonas yindakuii S-1072GCA_004803715completepatric2565782

External links

@ref: 20925

culture collection no.: DSM 18749, CCM 7897, NEU 1219

straininfo link

@refpassport
20218http://www.straininfo.net/strains/885568
20218http://www.straininfo.net/strains/885567

literature

  • topic: Phylogeny
  • Pubmed-ID: 22888185
  • title: Azorhizobium oxalatiphilum sp. nov., and emended description of the genus Azorhizobium.
  • authors: Lang E, Schumann P, Adler S, Sproer C, Sahin N
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.045229-0
  • year: 2012
  • mesh: Azorhizobium/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Genotype, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rumex/*microbiology, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorstitledoi/urljournalpubmedcatalogueID_cross_reference
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
20925Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-18749Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18749)
2715110.1099/ijs.0.045229-022888185
30820Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172877604127151
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes