Strain identifier

BacDive ID: 24636

Type strain: Yes

Species: Streptosporangium shengliense

Strain Designation: NEAU-GH7

Strain history: <- C. Liu, Northeast Agricultural Univ., Harbin, China; NEAU-GH7 <- X. Zhang, Harbin,China

NCBI tax ID(s): 1301839 (species)

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General

@ref: 20843

BacDive-ID: 24636

DSM-Number: 45881

keywords: 16S sequence, Bacteria, mesophilic

description: Streptosporangium shengliense NEAU-GH7 is a mesophilic bacterium that was isolated from lake sediment.

NCBI tax id

  • NCBI tax id: 1301839
  • Matching level: species

strain history

  • @ref: 20843
  • history: <- C. Liu, Northeast Agricultural Univ., Harbin, China; NEAU-GH7 <- X. Zhang, Harbin,China

doi: 10.13145/bacdive24636.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Streptosporangium
  • species: Streptosporangium shengliense
  • full scientific name: Streptosporangium shengliense corrig. Zhang et al. 2016

  • synonyms

    • @ref: 20215
    • synonym: Streptosporangium shengliensis

@ref: 20843

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Streptosporangium

species: Streptosporangium shengliense

full scientific name: Streptosporangium shengliense Zhang et al. 2016

strain designation: NEAU-GH7

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
20843GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
20843STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
20843GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
20843ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

  • @ref: 20843
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 20843
  • sample type: lake sediment
  • geographic location: Jilin Province, Changchun (43° 88' N 125° 35'E)
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 43
  • longitude: 125.583

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_133905.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_1144;97_1343;98_73736;99_133905&stattab=map
  • Last taxonomy: Streptosporangium
  • 16S sequence: KC513503
  • Sequence Identity:
  • Total samples: 311
  • soil counts: 193
  • aquatic counts: 14
  • animal counts: 5
  • plant counts: 99

Safety information

risk assessment

  • @ref: 20843
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20843
  • description: Streptosporangium shengliense strain NEAU-GH7 16S ribosomal RNA gene, partial sequence
  • accession: KC513503
  • length: 1518
  • database: ena
  • NCBI tax ID: 1301839

GC content

  • @ref: 20843
  • GC-content: 67.6
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 20843

culture collection no.: DSM 45881, CGMCC 4.7105

straininfo link

  • @ref: 88478
  • straininfo: 396695

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24190344Streptosporangium shengliense [corrected] sp. nov., a novel actinomycete isolated from a lake sediment.Zhang X, Liu C, Zhang Y, Wang H, Wang S, Li C, Wang X, Xiang WAntonie Van Leeuwenhoek10.1007/s10482-013-0070-72013Actinomycetales/*classification/genetics/*isolation & purification, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Geologic Sediments/*microbiology, Lakes/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsGenetics
Phylogeny25893956Streptosporangium sonchi sp. nov. and Streptosporangium kronopolitis sp. nov., two novel actinobacteria isolated from a root of common sowthistle (Sonchus oleraceus L.) and a millipede (Kronopolites svenhedind Verhoeff).Ma Z, Liu H, Liu C, He H, Zhao J, Wang X, Li J, Wang X, Xiang WAntonie Van Leeuwenhoek10.1007/s10482-015-0443-12015Actinobacteria/*classification/cytology/genetics/*isolation & purification, Animals, Arthropods/*microbiology, Bacterial Typing Techniques, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Plant Roots/microbiology, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sonchus/*microbiology, Spores, Bacterial/growth & developmentGenetics
Phylogeny26767659Streptosporangium lutulentum sp. nov., Streptosporangium fenghuangense sp. nov. and Streptosporangium corydalis sp. nov., three novel actinobacterial species isolated from National Forest Park of Fenghuang Mountain.Fang B, Liu H, Pan T, Liu C, Guan X, He H, Yan K, Li J, Xiang W, Wang XAntonie Van Leeuwenhoek10.1007/s10482-016-0650-42016Actinobacteria/*classification/genetics/isolation & purification/ultrastructure, Bacterial Typing Techniques, Base Composition, *Environment, *Environmental Microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Phylogeny27031531Streptosporangium jiaoheense sp. nov. and Streptosporangium taraxaci sp. nov., actinobacteria isolated from soil and dandelion root (Taraxacum mongolicum Hand.-Mazz.).Zhao J, Guo L, Li Z, Piao C, Li Y, Li J, Liu C, Wang X, Xiang WInt J Syst Evol Microbiol10.1099/ijsem.0.0010402016Actinobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Taraxacum/*microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20843Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45881Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45881)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88478Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396695.1