Strain identifier
BacDive ID: 24632
Type strain: 
Species: Nonomuraea guangzhouensis
Strain Designation: NEAU-ZJ3
Strain history: CGMCC 4.7101 <-- S. Wang et al.; Northeast Agric. Univ., China; NEAU-ZJ3.
NCBI tax ID(s): 1291555 (species)
version 8.1 (current version)
General
@ref: 20692
BacDive-ID: 24632
DSM-Number: 45889
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Nonomuraea guangzhouensis NEAU-ZJ3 is a spore-forming, mesophilic bacterium that was isolated from soil from a riverbank.
NCBI tax id
- NCBI tax id: 1291555
- Matching level: species
strain history
| @ref | history |
|---|---|
| 20692 | <- C. Liu, Northeast Agricultural Univ., Harbin, China; NEAU-ZJ3 <- S. Wang, Northeast Agricultural Univ., Harbin, China |
| 67770 | CGMCC 4.7101 <-- S. Wang et al.; Northeast Agric. Univ., China; NEAU-ZJ3. |
doi: 10.13145/bacdive24632.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Streptosporangiaceae
- genus: Nonomuraea
- species: Nonomuraea guangzhouensis
- full scientific name: Nonomuraea guangzhouensis Wang et al. 2017
@ref: 20692
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptosporangiaceae
genus: Nonomuraea
species: Nonomuraea guangzhouensis
full scientific name: Nonomuraea guangzhouensis Wang et al. 2017
strain designation: NEAU-ZJ3
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 94.474 | |
| 69480 | 99.999 | positive |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 20692 | GPHF-MEDIUM (DSMZ Medium 553) | yes | https://mediadive.dsmz.de/medium/553 | Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water |
| 20692 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
| 20692 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
| 20692 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 20692 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 96 |
| 69480 | yes | 100 |
observation
- @ref: 67770
- observation: quinones: MK-9(H4), MK-9(H2), MK-9
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 20692 | soil from a riverbank | Guangdong Province, Guangzhou, Pearl river (23° 12' N, 113° 28' E) | China | CHN | Asia | 23.2 | 113.467 |
| 67770 | Soil from the riverbank of the Pearl River in Guangzhou | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #River (Creek) |
| #Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 20692
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20692
- description: Nonomuraea guangzhouensis strain NEAU-ZJ3 16S ribosomal RNA gene, partial sequence
- accession: KC417349
- length: 1505
- database: ena
- NCBI tax ID: 1291555
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Nonomuraea guangzhouensis CGMCC 4.7101 | GCA_019396345 | scaffold | ncbi | 1291555 |
| 66792 | Nonomuraea guangzhouensis strain CGMCC 4.7101 | 1291555.3 | wgs | patric | 1291555 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 20692 | 67.4 | thermal denaturation, midpoint method (Tm) |
| 67770 | 67.03-67.77 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 96 | no |
| flagellated | no | 98.171 | no |
| gram-positive | yes | 84.587 | no |
| anaerobic | no | 98.87 | no |
| aerobic | yes | 89.668 | no |
| halophile | no | 92.13 | no |
| spore-forming | yes | 93.048 | no |
| motile | no | 90.655 | no |
| thermophile | no | 98.239 | yes |
| glucose-util | yes | 88.94 | no |
| glucose-ferment | no | 91.851 | no |
External links
@ref: 20692
culture collection no.: DSM 45889, CGMCC 4.7101, JCM 33041
straininfo link
- @ref: 88474
- straininfo: 406741
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24179038 | Nonomuraea guangzhouensis sp. nov., and Nonomuraea harbinensis sp. nov., two novel actinomycetes isolated from soil. | Wang S, Liu C, Zhang Y, Zhao J, Zhang X, Yang L, Wang X, Xiang W | Antonie Van Leeuwenhoek | 10.1007/s10482-013-0058-3 | 2013 | Actinomycetales/*classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics/metabolism, Fatty Acids/chemistry/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil Microbiology | Metabolism |
| Phylogeny | 29043953 | Nonomuraea glycinis sp. nov., a novel actinomycete isolated from the root of black soya bean [Glycine max (L.) Merr]. | Li Z, Song W, Zhao J, Zhuang X, Zhao Y, Wang X, Xiang W | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002406 | 2017 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soybeans/*microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 29744692 | Nonomuraea rhizosphaerae sp. nov., an actinomycete isolated from the rhizosphere soil of a rubber tree (Hevea brasiliensis Muell. Arg). | Zhao J, Mu S, Zhao Q, Jiang S, Cao P, Guo X, Wang X, Xiang W | Antonie Van Leeuwenhoek | 10.1007/s10482-018-1094-9 | 2018 | Actinomycetales/classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Hevea/growth & development, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, *Soil Microbiology | Metabolism |
| Phylogeny | 35666673 | Nonomuraea aurantiaca sp. nov., a novel cellulase-producing actinobacterium isolated from soil. | Lin J, Zhang L, Qian L, Yang Y, Xiang W, Zhao J, Wang X | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005411 | 2022 | *Actinomycetales, Bacterial Typing Techniques, Base Composition, *Cellulase/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phosphatidylethanolamines, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, Soil Microbiology | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20692 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45889 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45889) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 88474 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406741.1 |