Strain identifier
BacDive ID: 24625
Type strain: 
Species: Streptomyces zhaozhouensis
Strain Designation: NEAU-LZS-5
Strain history: <- C. Liu, Northeast Agricultural University, Harbin, China; NEAU-LZS-5 <- H. He
NCBI tax ID(s): 1300267 (species)
version 8.1 (current version)
General
@ref: 21054
BacDive-ID: 24625
DSM-Number: 42101
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Streptomyces zhaozhouensis NEAU-LZS-5 is a spore-forming, mesophilic bacterium that was isolated from surface-sterilized leaf of candelabra aloe (Aloe arborescens Mill.
NCBI tax id
- NCBI tax id: 1300267
- Matching level: species
strain history
- @ref: 21054
- history: <- C. Liu, Northeast Agricultural University, Harbin, China; NEAU-LZS-5 <- H. He
doi: 10.13145/bacdive24625.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces zhaozhouensis
- full scientific name: Streptomyces zhaozhouensis He et al. 2014
@ref: 21054
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces zhaozhouensis
full scientific name: Streptomyces zhaozhouensis He et al. 2014
strain designation: NEAU-LZS-5
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 96.337 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 21054 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 21054 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
culture temp
- @ref: 21054
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 21054
- sample type: surface-sterilized leaf of candelabra aloe (Aloe arborescens Mill
- host species: Aloe arborescens
- geographic location: Heilongjiang Province, Zhaozhou (45° 45' N 126° 41' E)
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 45.75
- longitude: 126.683
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Leaf (Phyllosphere) |
| #Host Body-Site | #Plant | #Sterilized plant part |
taxonmaps
- @ref: 69479
- File name: preview.99_21543.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_2135;97_13198;98_16246;99_21543&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: KC304791
- Sequence Identity:
- Total samples: 613
- soil counts: 177
- aquatic counts: 68
- animal counts: 307
- plant counts: 61
Safety information
risk assessment
- @ref: 21054
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21054
- description: Streptomyces zhaozhouensis strain NEAU-LZS-5 from China 16S ribosomal RNA gene, partial sequence
- accession: KC304791
- length: 1538
- database: ena
- NCBI tax ID: 1300267
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces zhaozhouensis CGMCC 4.7095 | GCA_900230195 | contig | ncbi | 1300267 |
| 66792 | Streptomyces zhaozhouensis strain CGMCC 4.7095 | 1300267.3 | wgs | patric | 1300267 |
| 66792 | Streptomyces zhaozhouensis CGMCC 4.7095 | 2718217652 | draft | img | 1300267 |
GC content
- @ref: 21054
- GC-content: 67.8
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | no | 93.242 | no |
| gram-positive | yes | 91.125 | no |
| anaerobic | no | 99.341 | no |
| halophile | no | 70.833 | no |
| spore-forming | yes | 91.675 | no |
| thermophile | no | 94.803 | yes |
| glucose-util | yes | 87.489 | no |
| flagellated | no | 97.711 | no |
| aerobic | yes | 94.281 | no |
| glucose-ferment | no | 92.327 | no |
External links
@ref: 21054
culture collection no.: DSM 42101, CGMCC 4.7095
straininfo link
- @ref: 88469
- straininfo: 403965
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24368691 | Streptomyces zhaozhouensis sp. nov., an actinomycete isolated from candelabra aloe (Aloe arborescens Mill). | He H, Liu C, Zhao J, Li W, Pan T, Yang L, Wang X, Xiang W | Int J Syst Evol Microbiol | 10.1099/ijs.0.056317-0 | 2013 | Aloe/*microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Leaves/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 25237147 | Streptomyces burgazadensis sp. nov., isolated from soil. | Saricaoglu S, Isik K, Veyisoglu A, Saygin H, Cetin D, Guven K, Sproer C, Klenk HP, Sahin N | Int J Syst Evol Microbiol | 10.1099/ijs.0.065870-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Turkey, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 32375984 | Streptomyces mimosae sp. nov., an endophytic actinomycete isolated from the root of Mimosa pudica in Thailand. | Klykleung N, Yuki M, Kudo T, Ohkuma M, Phongsopitanun W, Inahashi Y, Matsumoto A, Tanasupawat S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004170 | 2020 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Mimosa/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/isolation & purification, Thailand, Vitamin K 2/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21054 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42101 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42101) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 88469 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403965.1 |