Archive BacDiveID:10.13145/bacdive24614.20230509.8.1

Strain identifier

BacDive ID: 24614

Type strain:

Species: Streptomyces polyrhachii

Strain Designation: NEAU-ycm1

Strain history: <- C. Liu, Notheast Agricultural University, Harbin, China; NEAU-ycm1 <- C. Yu

NCBI tax ID(s): 1282885 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 21043

BacDive-ID: 24614

DSM-Number: 42102

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces polyrhachii NEAU-ycm1 is a mesophilic bacterium that was isolated from edible chinese black ant Polyrhachis vicina Roger.

NCBI tax id

NCBI tax id: 1282885
Matching level: species

strain history

@ref: 21043
history: <- C. Liu, Notheast Agricultural University, Harbin, China; NEAU-ycm1 <- C. Yu

doi: 10.13145/bacdive24614.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Kitasatosporales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces polyrhachii
full scientific name: Streptomyces polyrhachii Yu et al. 2013

@ref: 21043

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces polyrhachii

full scientific name: Streptomyces polyrhachii Yu et al. 2013

strain designation: NEAU-ycm1

type strain: yes

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
21043	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	yes	https://mediadive.dsmz.de/medium/65	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
21043	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	yes	https://mediadive.dsmz.de/medium/84	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@ref: 21043
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 21043
sample type: edible chinese black ant Polyrhachis vicina Roger
host species: Polyrhachis vicina
geographic location: Heilongjiang Province, Harbin, Northeast Agriculture University
country: China
origin.country: CHN
continent: Asia
latitude: 46.2333
longitude: 127.2

isolation source categories

Cat1: #Host
Cat2: #Arthropoda
Cat3: #Insecta

Sequence information

16S sequences

@ref: 21043
description: Streptomyces polyrhachis strain NEAU-ycm1 16S ribosomal RNA gene, partial sequence
accession: KC139399
length: 1535
database: ena
NCBI tax ID: 1282885

GC content

@ref: 21043
GC-content: 74.3
method: thermal denaturation, midpoint method (Tm)

External links

@ref: 21043

culture collection no.: DSM 42102, CGMCC 4.7094

literature

topic: Phylogeny
Pubmed-ID: 24002610
title: Streptomyces polyrhachii sp. nov., a novel actinomycete isolated from an edible Chinese black ant (Polyrhachis vicina Roger).
authors: Yu C, Liu C, Wang X, Zhao J, Yang L, Gao R, Zhang Y, Xiang W
journal: Antonie Van Leeuwenhoek
DOI: 10.1007/s10482-013-0021-3
year: 2013
mesh: Animals, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Hymenoptera/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/*isolation & purification/metabolism
topic2: Genetics

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
21043	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-42102	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42102)