Strain identifier

BacDive ID: 24603

Type strain: Yes

Species: Streptococcus porcorum

Strain Designation: 682-03 = 682/03

Strain history: <- CCUG <- A. I. Vela <- Univ. Complutense Madrid, VISAVET Lab., Spain

NCBI tax ID(s): 701526 (species)

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General

@ref: 21033

BacDive-ID: 24603

DSM-Number: 28302

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, animal pathogen

description: Streptococcus porcorum 682-03 = 682/03 is a microaerophile, mesophilic animal pathogen that was isolated from pig joint, arthritis.

NCBI tax id

  • NCBI tax id: 701526
  • Matching level: species

strain history

  • @ref: 21033
  • history: <- CCUG <- A. I. Vela <- Univ. Complutense Madrid, VISAVET Lab., Spain

doi: 10.13145/bacdive24603.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus porcorum
  • full scientific name: Streptococcus porcorum Vela et al. 2011

@ref: 21033

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus porcorum

full scientific name: Streptococcus porcorum Vela et al. 2011

strain designation: 682-03 = 682/03

type strain: yes

Morphology

colony morphology

  • @ref: 21033
  • type of hemolysis: alpha
  • hemolysis ability: 1
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21033COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
21033TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21033positivegrowth37mesophilic
61695positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
21033microaerophile
61695microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837028087glycogen-builds acid from
6837028017starch-builds acid from
6837016634raffinose-builds acid from
6837015443inulin-builds acid from
6837027082trehalose+builds acid from
6837017716lactose+builds acid from
6837017924D-sorbitol-builds acid from
6837016899D-mannitol-builds acid from
6837030849L-arabinose-builds acid from
6837016988D-ribose-builds acid from
6837029016arginine-hydrolysis
683704853esculin+hydrolysis
68370606565hippurate-hydrolysis
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838127082trehalose+builds acid from
6838116634raffinose-builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6837015688acetoinno
6838115688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6838115688acetoin-
6837015688acetoin-

enzymes

@refvalueactivityec
21033catalase-1.11.1.6
21033cytochrome-c oxidase-1.9.3.1
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6
68370arginine dihydrolase-3.5.3.6
68370leucine arylamidase+3.4.11.1
68370alkaline phosphatase-3.1.3.1
68370beta-galactosidase-3.2.1.23
68370beta-glucuronidase-3.2.1.31
68370alpha-galactosidase-3.2.1.22
68370pyrrolidonyl arylamidase-3.4.19.3
68370beta-glucosidase+3.2.1.21

API 20STR

@refVPHIPESCPYRAalpha GALbeta GURbeta GALPALLAPADHRIBARAMANSORLACTREINURAFAMDGLYG
21033--+-----+-----++----

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
21033-+-------++-+----+-------+--+/----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
21033pig joint, arthritisMadridSpainESPEurope
61695Pig joint,arthritisMadridSpainESPEurope2003

isolation source categories

Cat1Cat2Cat3
#Infection#Inflammation
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Limb#Joint

Safety information

risk assessment

  • @ref: 21033
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21033
  • description: Streptococcus porcorum partial 16S rRNA gene, strain 682-03
  • accession: FN643224
  • length: 1380
  • database: ena
  • NCBI tax ID: 701526

Genome sequences

  • @ref: 66792
  • description: Streptococcus porcorum DSM 28302
  • accession: 2928214140
  • assembly level: draft
  • database: img
  • NCBI tax ID: 701526

GC content

  • @ref: 21033
  • GC-content: 38.9

External links

@ref: 21033

culture collection no.: DSM 28302, CCUG 58479, CECT 7593

straininfo link

  • @ref: 88448
  • straininfo: 377775

literature

  • topic: Phylogeny
  • Pubmed-ID: 20675439
  • title: Streptococcus porcorum sp. nov., isolated from domestic and wild pigs.
  • authors: Vela AI, Sanchez V, Mentaberre G, Lavin S, Dominguez L, Fernandez-Garayzabal JF
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.022657-0
  • year: 2010
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, Chile, DNA, Bacterial/genetics, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain, Streptococcus/*classification/genetics/isolation & purification, Swine/*microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21033Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28302Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28302)
61695Curators of the CCUGhttps://www.ccug.se/strain?id=58479Culture Collection University of Gothenburg (CCUG) (CCUG 58479)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68370Automatically annotated from API 20STR
68381Automatically annotated from API rID32STR
88448Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID377775.1