Archive BacDiveID:10.13145/bacdive24545.20240510.9

Strain identifier

BacDive ID: 24545

Type strain:

Species: Pedobacter sp.

Strain Designation: W6a-b1

Strain history: K.-S. Bae W6a-b1 <-- W.-J. Jeong P-5.

NCBI tax ID(s): 1411316 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 20723

BacDive-ID: 24545

DSM-Number: 22383

keywords: 16S sequence, Bacteria

description: Pedobacter sp. W6a-b1 is a bacterium that was isolated from paddy soil.

NCBI tax id

NCBI tax id: 1411316
Matching level: species

strain history

@ref	history
20723	<- K. S. Bae, Korea Res. Inst. Biosci. & Biotechnol. (KRIBB), Taejon, South Korea; W6a-b1 <- W.-J. Jeong
67770	K.-S. Bae W6a-b1 <-- W.-J. Jeong P-5.

doi: 10.13145/bacdive24545.20240510.9

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacteroidota
domain: Bacteria
phylum: Bacteroidota
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Pedobacter
species: Pedobacter sp.
full scientific name: Pedobacter Steyn et al. 1998

@ref: 20723

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Sphingobacteriales

family: Sphingobacteriaceae

genus: Pedobacter

species: Pedobacter sp.

full scientific name: Pedobacter sp.

strain designation: W6a-b1

type strain: no

Culture and growth conditions

culture medium

@ref: 20723
name: R2A MEDIUM (DSMZ Medium 830)
growth: yes
link: https://mediadive.dsmz.de/medium/830
composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@ref	growth	type	temperature
20723	positive	growth	25
67770	positive	growth	25

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent
20723	paddy soil	Chungbuk, Ochang	Republic of Korea	KOR	Asia
67770	Soil in a potato field	Ochang, Chungbuk	Republic of Korea	KOR	Asia

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Field
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Condition	#Anoxic (anaerobic)
#Condition	#Humid

taxonmaps

@ref: 69479
File name: preview.99_71490.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_115;96_857;97_38578;98_50119;99_71490&stattab=map
Last taxonomy: Pedobacter
16S sequence: FJ377316
Sequence Identity:
Total samples: 3533
soil counts: 1970
aquatic counts: 300
animal counts: 452
plant counts: 811

Sequence information

16S sequences

@ref: 20723
description: Pedobacter sp. b3W6a-b1 16S ribosomal RNA gene, partial sequence
accession: FJ377316
length: 1392
database: nuccore
NCBI tax ID: 572035

GC content

@ref: 20723
GC-content: 37.1

External links

@ref: 20723

culture collection no.: DSM 22383, JCM 16321, KCTC 22702

straininfo link

@ref: 88400
straininfo: 397832

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
20723	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-22383	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22383)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
88400	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID397832.1