Strain identifier

BacDive ID: 24492

Type strain: Yes

Species: Paracoccus siganidrum

Strain Designation: M26

Culture col. no.: DSM 26381, CCTCC AB 2012865

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20720

BacDive-ID: 24492

DSM-Number: 26381

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Paracoccus siganidrum M26 is a mesophilic bacterium that was isolated from gastrointestinal tract of the fish Siganus fuscescens.

strain history: <- Y. Liu, Guangdong Ocean Univ., College of Food Science and Technol., China; M26 <- W. Shi

doi: 10.13145/bacdive24492.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Rhodobacteraceae
  • genus: Paracoccus
  • species: Paracoccus siganidrum
  • full scientific name: Paracoccus siganidrum Liu et al. 2013

@ref: 20720

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Paracoccus

species: Paracoccus siganidrum

full scientific name: Paracoccus siganidrum Liu et al. 2013

strain designation: M26

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlink
20720TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium545.pdf
20720CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium220.pdf

culture temp

  • @ref: 20720
  • growth: positive
  • type: growth
  • temperature: 28-37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 20720
  • sample type: gastrointestinal tract of the fish Siganus fuscescens
  • host species: Siganus fuscescens
  • geographic location: Guangdong province, Zhanjiang port (N21° 9', E110°17')
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 21.15
  • longitude: 110.283

isolation source categories

Cat1Cat2
#Host#Fishes
#Host Body-Site#Gastrointestinal tract

Sequence information

16S sequences

  • @ref: 20720
  • description: Paracoccus siganidrum strain M26 16S ribosomal RNA gene, partial sequence
  • accession: JX398976
  • length: 1422
  • database: ena
  • NCBI tax ID: 1276757

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paracoccus siganidrum M26GCA_003709565contigncbi1276757
66792Paracoccus siganidrum DSM 26381GCA_003594835contigncbi1276757
66792Paracoccus siganidrum strain DSM 263811276757.3wgspatric1276757
66792Paracoccus siganidrum strain M261276757.4wgspatric1276757

GC content

  • @ref: 20720
  • GC-content: 64.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 20720

culture collection no.: DSM 26381, CCTCC AB 2012865

Reference

@idauthorstitledoi/urlcatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20720Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26381Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26381)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes