Strain identifier

BacDive ID: 24455

Type strain: Yes

Species: Saccharothrix saharensis

Strain Designation: Sa152

Strain history: <- N. Sabaou, LPBVB, Kouba, ALgeria; Sa152

NCBI tax ID(s): 571190 (species)

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General

@ref: 20800

BacDive-ID: 24455

DSM-Number: 45456

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Saccharothrix saharensis Sa152 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil from a palm grove.

NCBI tax id

  • NCBI tax id: 571190
  • Matching level: species

strain history

  • @ref: 20800
  • history: <- N. Sabaou, LPBVB, Kouba, ALgeria; Sa152

doi: 10.13145/bacdive24455.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Saccharothrix
  • species: Saccharothrix saharensis
  • full scientific name: Saccharothrix saharensis Boubetra et al. 2013

@ref: 20800

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Saccharothrix

species: Saccharothrix saharensis

full scientific name: Saccharothrix saharensis Boubetra et al. 2013

strain designation: Sa152

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
31090positiverod-shapedno
69480positive100

colony morphology

  • @ref: 62237
  • incubation period: 3-4 days

pigmentation

  • @ref: 31090
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 20800
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20800positivegrowth28mesophilic
31090positivegrowth15-45
31090positiveoptimum30mesophilic
62237positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
31090positivegrowth07-09alkaliphile
31090positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31090aerobe
62237microaerophile

spore formation

@refspore formationconfidence
31090yes
69481yes100
69480yes100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3109030089acetate+carbon source
3109022599arabinose+carbon source
3109017057cellobiose+carbon source
3109028757fructose+carbon source
3109028260galactose+carbon source
3109017234glucose+carbon source
3109017754glycerol+carbon source
3109024996lactate+carbon source
3109017306maltose+carbon source
3109029864mannitol+carbon source
3109037684mannose+carbon source
3109037657methyl D-glucoside+carbon source
3109017268myo-inositol+carbon source
3109026271proline+carbon source
3109017272propionate+carbon source
3109015361pyruvate+carbon source
3109016634raffinose+carbon source
3109026546rhamnose+carbon source
3109033942ribose+carbon source
3109017814salicin+carbon source
3109030031succinate+carbon source
3109027082trehalose+carbon source
3109018222xylose+carbon source
310904853esculin+hydrolysis
3109017632nitrate+reduction

enzymes

  • @ref: 31090
  • value: gelatinase
  • activity: +

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
20800soil from a palm groveSahara, Adrar palm groveAlgeriaDZAAfrica
62237SoilAlgerian SaharaAlgeriaDZAAfrica2000

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Grove (Orchard)
#Environmental#Terrestrial#Soil
#Host#Plants#Tree

Safety information

risk assessment

  • @ref: 20800
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20800
  • description: Saccharothrix saharensis strain Sa152 16S ribosomal RNA gene, partial sequence
  • accession: FJ379333
  • length: 1506
  • database: ena
  • NCBI tax ID: 571190

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Saccharothrix saharensis DSM 45456GCA_006716745contigncbi571190
66792Saccharothrix saharensis strain DSM 45456571190.4wgspatric571190
66792Saccharothrix saharensis DSM 454562818991416draftimg571190

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes89.468yes
anaerobicno99.161yes
halophileno86.592no
spore-formingyes96.857no
glucose-utilyes87.264no
thermophileno98.829yes
flagellatedno96.649yes
aerobicyes90.975no
motileno90.893yes
glucose-fermentno91.81no

External links

@ref: 20800

culture collection no.: DSM 45456, CCUG 60213

straininfo link

  • @ref: 88330
  • straininfo: 397418

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23645017Saccharothrix saharensis sp. nov., an actinomycete isolated from Algerian Saharan soil.Boubetra D, Zitouni A, Bouras N, Mathieu F, Lebrihi A, Schumann P, Sproer C, Klenk HP, Sabaou NInt J Syst Evol Microbiol10.1099/ijs.0.051839-02013Actinomycetales/*classification/genetics/isolation & purification, Algeria, Bacterial Typing Techniques, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Genotype, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny25256705Saccharothrix carnea sp. nov., an actinobacterium isolated from soil.Liu C, Guan X, Wang S, Zhao J, Wang H, He H, Xiang W, Wang XInt J Syst Evol Microbiol10.1099/ijs.0.065557-02014Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Industrial Waste, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Pesticides, Phospholipids/chemistry, *Phylogeny, Pigments, Biological/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry, Waste WaterGenetics
Phylogeny26376915Saccharothrix ecbatanensis sp. nov., an actinobacterium isolated from soil.Mohammadipanah F, Hamedi J, Schumann P, Sproer C, Carmen Montero-Calasanz MD, Klenk HPInt J Syst Evol Microbiol10.1099/ijsem.0.0006072015Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Iran, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20800Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45456Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45456)
31090Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172741928776041
62237Curators of the CCUGhttps://www.ccug.se/strain?id=60213Culture Collection University of Gothenburg (CCUG) (CCUG 60213)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88330Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397418.1