Strain identifier
BacDive ID: 24435
Type strain:
Species: Pseudomonas composti
Strain Designation: C5
Strain history: <- J. F. Fernández-Garayzábal, Departamento Sanidad Animal, Facultad de Veterinaria, Universidad Complutense, Madrid; C5 <- A. Gibello, Departamento Sanidad Animal, Facultad de Veterinaria, Universidad Complutense, Madrid
NCBI tax ID(s): 658457 (species)
General
@ref: 21138
BacDive-ID: 24435
DSM-Number: 25649
keywords: 16S sequence, Bacteria, mesophilic
description: Pseudomonas composti C5 is a mesophilic bacterium that was isolated from compost sample made with vegetable and animal waste.
NCBI tax id
- NCBI tax id: 658457
- Matching level: species
strain history
- @ref: 21138
- history: <- J. F. Fernández-Garayzábal, Departamento Sanidad Animal, Facultad de Veterinaria, Universidad Complutense, Madrid; C5 <- A. Gibello, Departamento Sanidad Animal, Facultad de Veterinaria, Universidad Complutense, Madrid
doi: 10.13145/bacdive24435.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas composti
- full scientific name: Pseudomonas composti Gibello et al. 2011
@ref: 21138
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas composti
full scientific name: Pseudomonas composti Gibello et al. 2011
strain designation: C5
type strain: no
Morphology
multimedia
- @ref: 21138
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_25649.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 21138
- name: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535b
- composition: Name: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b) Composition: Trypticase soy broth 30.0 g/l Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l K2HPO4 2.5 g/l D(+)-Glucose 2.5 g/l Distilled water
culture temp
- @ref: 21138
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 24265 | gluconate | + | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | + | assimilation |
68369 | 16024 | D-mannose | + | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | + | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | + | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
21138 | - | - | - | + | - | - | - | - | + | - | + | + | - | - | + | + | - | + | + | - | + |
21138 | - | - | - | + | - | - | - | - | + | - | + | + | - | - | + | + | - | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 21138
- sample type: compost sample made with vegetable and animal waste
- geographic location: Province of Cuenca
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Biodegradation | #Composting |
#Host | #Plants | #Decomposing plant |
#Engineered | #Waste | #Solid animal waste |
taxonmaps
- @ref: 69479
- File name: preview.99_3509.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_64;98_1532;99_3509&stattab=map
- Last taxonomy: Pseudomonas
- 16S sequence: FN652314
- Sequence Identity:
- Total samples: 165
- soil counts: 8
- aquatic counts: 69
- animal counts: 56
- plant counts: 32
Safety information
risk assessment
- @ref: 21138
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21138
- description: Pseudomonas composti partial 16S rRNA gene, strain C5, culture collection CECT:7517
- accession: FN652314
- length: 1452
- database: ena
- NCBI tax ID: 658457
External links
@ref: 21138
culture collection no.: DSM 25649, CECT 7517
straininfo link
- @ref: 88314
- straininfo: 379929
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21138 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25649 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25649) | |
68369 | Automatically annotated from API 20NE | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
88314 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID379929.1 |