Strain identifier
BacDive ID: 24400
Type strain: 
Species: Pseudomonas sp.
Strain Designation: UK4
Strain history: <- M. S. Dueholm, Univ. Aalborg, Denmark; UK4
NCBI tax ID(s): 306 (species)
version 8.1 (current version)
General
@ref: 21131
BacDive-ID: 24400
DSM-Number: 29051
keywords: genome sequence, Bacteria, mesophilic
description: Pseudomonas sp. UK4 is a mesophilic bacterium that was isolated from drinking water reservoir.
NCBI tax id
- NCBI tax id: 306
- Matching level: species
strain history
- @ref: 21131
- history: <- M. S. Dueholm, Univ. Aalborg, Denmark; UK4
doi: 10.13145/bacdive24400.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas sp.
- full scientific name: Pseudomonas Migula 1894 (Approved Lists 1980)
synonyms
@ref synonym 20215 Serpens 20215 Flavimonas 20215 Stutzerimonas
@ref: 21131
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas sp.
full scientific name: Pseudomonas sp.
strain designation: UK4
type strain: no
Morphology
multimedia
- @ref: 21131
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_29051.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 21131
- name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1a
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 21131
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
compound production
- @ref: 21131
- compound: amyloids
Isolation, sampling and environmental information
isolation
- @ref: 21131
- sample type: drinking water reservoir
- geographic location: Aalborg
- country: Denmark
- origin.country: DNK
- continent: Europe
- latitude: 57.048
- longitude: 9.921
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Engineered | #Built environment | #Water reservoir (Aquarium/pool) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudomonas sp. UK4 | GCA_000174915 | contig | ncbi | 452680 |
| 66792 | Pseudomonas sp. UK4 | 452680.3 | wgs | patric | 452680 |
| 66792 | Pseudomonas sp. UK4 | 2597489874 | draft | img | 452680 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | no | 98.299 | no |
| anaerobic | no | 98.079 | no |
| halophile | no | 91.325 | no |
| spore-forming | no | 96.292 | no |
| glucose-util | yes | 93.215 | no |
| aerobic | yes | 94.211 | no |
| flagellated | yes | 83.342 | no |
| motile | yes | 90.351 | no |
| thermophile | no | 99.836 | yes |
| glucose-ferment | no | 90.875 | no |
External links
@ref: 21131
culture collection no.: DSM 29051
straininfo link
- @ref: 88309
- straininfo: 399347
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21131 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29051 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29051) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 88309 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399347.1 |