Strain identifier

BacDive ID: 24342

Type strain: No

Species: Prevotella jejuni

Strain Designation: CD3:27, CD3_27, CD3 : 27

Strain history: <- M. Hedberg, Umea University, Institution of Clinical Microbiology, Div. of Immunology; CD3:27

NCBI tax ID(s): 1177574 (species)

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General

@ref: 20742

BacDive-ID: 24342

DSM-Number: 26988

keywords: 16S sequence, Bacteria, anaerobe

description: Prevotella jejuni CD3:27 is an anaerobe bacterium that was isolated from biopsy from small intestine of child with coeliac disease.

NCBI tax id

  • NCBI tax id: 1177574
  • Matching level: species

strain history

  • @ref: 20742
  • history: <- M. Hedberg, Umea University, Institution of Clinical Microbiology, Div. of Immunology; CD3:27

doi: 10.13145/bacdive24342.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Prevotellaceae
  • genus: Prevotella
  • species: Prevotella jejuni
  • full scientific name: Prevotella jejuni Hedberg et al. 2013

@ref: 20742

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Prevotellaceae

genus: Prevotella

species: Prevotella jejuni

full scientific name: Prevotella jejuni Hedberg et al. 2013

strain designation: CD3:27, CD3_27, CD3 : 27

type strain: no

Morphology

colony morphology

  • @ref: 20742
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

  • @ref: 20742
  • name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/104
  • composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

culture temp

  • @ref: 20742
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 20742
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836727082trehalose-builds acid from
6836762345L-rhamnose-builds acid from
6836730911sorbitol-builds acid from
6836716634raffinose+builds acid from
683676731melezitose-builds acid from
6836716024D-mannose+builds acid from
6836717057cellobiose-builds acid from
6836717754glycerol-builds acid from
683674853esculin-hydrolysis
683675291gelatin-hydrolysis
6836730849L-arabinose-builds acid from
6836765327D-xylose-builds acid from
6836717814salicin-builds acid from
6836717306maltose+builds acid from
6836717992sucrose+builds acid from
6836717716lactose+builds acid from
6836716899D-mannitol-builds acid from
6836717634D-glucose+builds acid from
6836716199urea-hydrolysis
6836727897tryptophan-energy source
6838016199urea-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6836735581indoleno
6838035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
6838035581indole-
6836735581indole-

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase+3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate+
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380urease-3.5.1.5
68367beta-glucosidase-3.2.1.21
68367gelatinase-
68367urease-3.5.1.5

API 20A

@refINDUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRE
20742--+-+++-------+-+---

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
20742-+/--+++---+---+--++-+----+----

Isolation, sampling and environmental information

isolation

  • @ref: 20742
  • sample type: biopsy from small intestine of child with coeliac disease
  • geographic location: Umea
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Infection#Patient#Biopsy
#Host#Human#Child
#Host Body-Site#Gastrointestinal tract#Small intestine

taxonmaps

  • @ref: 69479
  • File name: preview.99_6325.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_44;96_87;97_173;98_1700;99_6325&stattab=map
  • Last taxonomy: Prevotella jejuni
  • 16S sequence: JQ778982
  • Sequence Identity:
  • Total samples: 7826
  • soil counts: 64
  • aquatic counts: 55
  • animal counts: 7656
  • plant counts: 51

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20742Prevotella jejuni strain CD3:27 16S ribosomal RNA gene, partial sequenceJQ7789821484nuccore1177574
124043Streptomyces sp. LV 3-13 16S ribosomal RNA gene, partial sequence.JQ7789851484nuccore1177574

GC content

  • @ref: 20742
  • GC-content: 41.8
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 20742

culture collection no.: DSM 26988, CCUG 60308

straininfo link

  • @ref: 88268
  • straininfo: 404117

literature

  • topic: Phylogeny
  • Pubmed-ID: 23793857
  • title: Prevotella jejuni sp. nov., isolated from the small intestine of a child with coeliac disease.
  • authors: Hedberg ME, Israelsson A, Moore ERB, Svensson-Stadler L, Wai SN, Pietz G, Sandstrom O, Hernell O, Hammarstrom ML, Hammarstrom S
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.052647-0
  • year: 2013
  • mesh: Acetic Acid/metabolism, Bacterial Typing Techniques, Base Composition, Celiac Disease/*microbiology, Cell Line, Tumor, Child, DNA, Bacterial/genetics, DNA-Directed RNA Polymerases/genetics, Epithelial Cells/microbiology, Fatty Acids/chemistry, Female, Humans, Intestine, Small/cytology/*microbiology, Molecular Sequence Data, *Phylogeny, Prevotella/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Succinic Acid/metabolism, Sweden
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20742Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26988Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26988)
68367Automatically annotated from API 20A
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88268Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID404117.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy