Strain identifier

BacDive ID: 24341

Type strain: No

Species: Prevotella histicola

Strain Designation: CD3:32

Strain history: <- M. Hedberg, Umea University, Institution of Clinical Microbiology, Div. of Immunology; CD3:32

NCBI tax ID(s): 470565 (species)

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General

@ref: 20741

BacDive-ID: 24341

DSM-Number: 26979

keywords: 16S sequence, Bacteria, anaerobe, human pathogen

description: Prevotella histicola CD3:32 is an anaerobe human pathogen that was isolated from biopsy from small intestine of child with celiac disease.

NCBI tax id

  • NCBI tax id: 470565
  • Matching level: species

strain history

  • @ref: 20741
  • history: <- M. Hedberg, Umea University, Institution of Clinical Microbiology, Div. of Immunology; CD3:32

doi: 10.13145/bacdive24341.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Prevotellaceae
  • genus: Prevotella
  • species: Prevotella histicola
  • full scientific name: Prevotella histicola Downes et al. 2008

@ref: 20741

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Prevotellaceae

genus: Prevotella

species: Prevotella histicola

full scientific name: Prevotella histicola Downes et al. 2008 emend. Hahnke et al. 2016

strain designation: CD3:32

type strain: no

Morphology

colony morphology

  • @ref: 20741
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

  • @ref: 20741
  • name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/110
  • composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

culture temp

  • @ref: 20741
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 20741
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836727082trehalose-builds acid from
6836762345L-rhamnose-builds acid from
6836730911sorbitol-builds acid from
6836716634raffinose-builds acid from
683676731melezitose-builds acid from
6836716024D-mannose-builds acid from
6836717057cellobiose-builds acid from
6836717754glycerol-builds acid from
683675291gelatin-hydrolysis
6836730849L-arabinose-builds acid from
6836765327D-xylose-builds acid from
6836717814salicin-builds acid from
6836717306maltose-builds acid from
6836717992sucrose-builds acid from
6836717716lactose-builds acid from
6836716899D-mannitol-builds acid from
6836717634D-glucose-builds acid from
6836716199urea-hydrolysis
6836727897tryptophan-energy source
6838016199urea-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6836735581indoleno
6838035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
6838035581indole-
6836735581indole-

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase+
68380histidine arylamidase+
68380glycin arylamidase-
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase+3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate+
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380urease-3.5.1.5
68367catalase-1.11.1.6
68367gelatinase-
68367urease-3.5.1.5

API 20A

@refINDUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRECAT
20741-----------+/----------

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
20741-+/-++++---+---+--++++---++-++-

Isolation, sampling and environmental information

isolation

  • @ref: 20741
  • sample type: biopsy from small intestine of child with celiac disease
  • geographic location: Umea
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Infection#Patient#Biopsy
#Infection#Patient
#Host Body-Site#Gastrointestinal tract#Small intestine
#Host#Human#Child

taxonmaps

  • @ref: 69479
  • File name: preview.99_3080.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_44;96_87;97_92;98_2367;99_3080&stattab=map
  • Last taxonomy: Prevotella histicola subclade
  • 16S sequence: JQ778984
  • Sequence Identity:
  • Total samples: 84211
  • soil counts: 1242
  • aquatic counts: 1647
  • animal counts: 80804
  • plant counts: 518

Safety information

risk assessment

  • @ref: 20741
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20741
  • description: Prevotella sp. CD3:32 16S ribosomal RNA gene, partial sequence
  • accession: JQ778984
  • length: 1484
  • database: nuccore
  • NCBI tax ID: 1177575

External links

@ref: 20741

culture collection no.: DSM 26979, CCUG 60372

straininfo link

  • @ref: 88267
  • straininfo: 401238

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20741Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26979Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26979)
68367Automatically annotated from API 20A
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88267Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401238.1