Strain identifier
BacDive ID: 2432
Type strain: 
Species: Allochromatium vinosum
Strain Designation: de Boer
Strain history: <- W. de Boer, de Boer
NCBI tax ID(s): 1049 (species)
version 8.1 (current version)
General
@ref: 858
BacDive-ID: 2432
DSM-Number: 1686
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Allochromatium vinosum de Boer is an anaerobe, mesophilic bacterium of the family Chromatiaceae.
NCBI tax id
- NCBI tax id: 1049
- Matching level: species
strain history
- @ref: 858
- history: <- W. de Boer, de Boer
doi: 10.13145/bacdive2432.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Chromatiaceae
- genus: Allochromatium
- species: Allochromatium vinosum
- full scientific name: Allochromatium vinosum (Ehrenberg 1838) Imhoff et al. 1998
synonyms
@ref synonym 20215 Monas vinosa 20215 Chromatium vinosum
@ref: 858
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Chromatiaceae
genus: Allochromatium
species: Allochromatium vinosum
full scientific name: Allochromatium vinosum (Ehrenberg 1838) Imhoff et al. 1998
strain designation: de Boer
type strain: no
Culture and growth conditions
culture medium
- @ref: 858
- name: PFENNIG'S MEDIUM I (modified 1988, for purple sulfur bacteria) (DSMZ Medium 28)
- growth: yes
- link: https://mediadive.dsmz.de/medium/28
- composition: Name: PFENNIG'S MEDIUM I (DSMZ Medium 28) Composition: NaHCO3 1.5 g/l Na2S x 9 H2O 0.592592 g/l MgSO4 x 7 H2O 0.500001 g/l KCl 0.349999 g/l KH2PO4 0.349999 g/l Ammonium chloride 0.349999 g/l Pyruvic acid sodium salt 0.25 g/l Dextrose 0.25 g/l CaCl2 x 2 H2O 0.25 g/l Yeast extract 0.25 g/l Ammonium acetate 0.25 g/l Na2-EDTA 0.003 g/l Resazurin 0.00225 g/l FeSO4 x 7 H2O 0.0011 g/l Vitamin B12 0.001 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 2 H2O 5e-05 g/l ZnCl2 4.2e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Na2MoO4 x 2 H2O 1.8e-05 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water
culture temp
- @ref: 858
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 858
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 858
- country: Netherlands
- origin.country: NLD
- continent: Europe
taxonmaps
- @ref: 69479
- File name: preview.99_3612.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_169;96_1874;97_2251;98_2763;99_3612&stattab=map
- Last taxonomy: Allochromatium
- 16S sequence: FJ812041
- Sequence Identity:
- Total samples: 671
- soil counts: 87
- aquatic counts: 525
- animal counts: 49
- plant counts: 10
Safety information
risk assessment
- @ref: 858
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Allochromatium vinosum strain DSM 1686 16S ribosomal RNA gene, partial sequence | FJ812041 | 1267 | ena | 1049 |
| 20218 | Allochromatium vinosum strain DSM 1686 16S-23S ribosomal RNA intergenic spacer, partial sequence | FJ823971 | 420 | ena | 1049 |
External links
@ref: 858
culture collection no.: DSM 1686
straininfo link
- @ref: 71981
- straininfo: 47472
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 858 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1686) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1686 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 71981 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47472.1 | StrainInfo: A central database for resolving microbial strain identifiers |