Strain identifier
BacDive ID: 24308
Type strain: 
Species: Aminobacter sp.
Strain Designation: 728
Strain history: <- J. Rudat, Karlsruher Institut für Technologie, Institut für Ingenieurbiologie und Biotechnologie des Abwassers; strain 728 <- A. Puñal
NCBI tax ID(s): 1072665 (species)
version 8.1 (current version)
General
@ref: 20304
BacDive-ID: 24308
DSM-Number: 24754
keywords: genome sequence, 16S sequence, Bacteria, psychrophilic
description: Aminobacter sp. 728 is a psychrophilic bacterium that was isolated from sea bottom surface liquid clay-silt.
NCBI tax id
- NCBI tax id: 1072665
- Matching level: species
strain history
- @ref: 20304
- history: <- J. Rudat, Karlsruher Institut für Technologie, Institut für Ingenieurbiologie und Biotechnologie des Abwassers; strain 728 <- A. Puñal
doi: 10.13145/bacdive24308.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Phyllobacteriaceae
- genus: Aminobacter
- species: Aminobacter sp.
- full scientific name: Aminobacter Urakami et al. 1992
synonyms
@ref synonym 20215 Chelatobacter 20215 Carbophilus
@ref: 20304
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Phyllobacteriaceae
genus: Aminobacter
species: Aminobacter sp.
full scientific name: Aminobacter sp.
strain designation: 728
type strain: no
Morphology
colony morphology
- @ref: 20304
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 20304
- name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)
- growth: yes
- link: https://mediadive.dsmz.de/medium/381
- composition: Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
culture temp
- @ref: 20304
- growth: positive
- type: growth
- temperature: 20
- range: psychrophilic
Isolation, sampling and environmental information
isolation
- @ref: 20304
- sample type: sea bottom surface liquid clay-silt
- geographic location: Raunefjorden
- country: Norway
- origin.country: NOR
- continent: Europe
- latitude: 60.2753
- longitude: 5.1842
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Terrestrial | #Mud (Sludge) |
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20304 | Aminobacter sp. DSM 24754 partial 16S rRNA gene, strain 728 | HE578126 | 1103 | ena | 1072665 |
| 20304 | Aminobacter sp. strain DSM 24754 16S ribosomal RNA gene, partial sequence | MK511828 | 1452 | ena | 1872490 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Aminobacter sp. DSM 24754 | 1072665.3 | wgs | patric | 1072665 |
| 66792 | Aminobacter sp. DSM 24754 | 2913427924 | draft | img | 1072665 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 84.579 | no |
| flagellated | no | 84.223 | no |
| gram-positive | no | 97.721 | no |
| anaerobic | no | 98.287 | no |
| aerobic | yes | 91.927 | no |
| halophile | no | 88.741 | no |
| spore-forming | no | 96.189 | no |
| thermophile | no | 97.547 | yes |
| glucose-util | yes | 81.277 | no |
| glucose-ferment | no | 91.24 | no |
External links
@ref: 20304
culture collection no.: DSM 24754
straininfo link
- @ref: 88241
- straininfo: 398585
literature
- Pubmed-ID: 22738219
- title: Novel amidases of two Aminobacter sp. strains: Biotransformation experiments and elucidation of gene sequences.
- authors: Engel U, Syldatk C, Rudat J
- journal: AMB Express
- DOI: 10.1186/2191-0855-2-33
- year: 2012
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20304 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24754 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24754) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 88241 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398585.1 |