Strain identifier
BacDive ID: 24293
Type strain: 
Species: Paenibacillus dongdonensis
Strain Designation: KUDC0114
Strain history: <- Sa-Youl Ghim, Kyungpook National Univ., Korea
NCBI tax ID(s): 1476543 (species)
version 8.1 (current version)
General
@ref: 20717
BacDive-ID: 24293
DSM-Number: 27607
keywords: 16S sequence, Bacteria, facultative anaerobe, spore-forming, mesophilic, motile, rod-shaped
description: Paenibacillus dongdonensis KUDC0114 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from rhizospheric soil of Elymus tsukushiensis.
NCBI tax id
- NCBI tax id: 1476543
- Matching level: species
strain history
| @ref | history |
|---|---|
| 20717 | <- S.-Y. Ghim, Kyungpook Natl. Univ., Daegu, South Korea; KUDC0114 |
| 67771 | <- Sa-Youl Ghim, Kyungpook National Univ., Korea |
doi: 10.13145/bacdive24293.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus dongdonensis
- full scientific name: Paenibacillus dongdonensis Son et al. 2014
@ref: 20717
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus dongdonensis
full scientific name: Paenibacillus dongdonensis Son et al. 2014
strain designation: KUDC0114
type strain: yes
Morphology
cell morphology
| @ref | cell shape | motility | flagellum arrangement | gram stain |
|---|---|---|---|---|
| 67771 | rod-shaped | yes | monotrichous, polar | |
| 67771 | positive |
Culture and growth conditions
culture medium
- @ref: 20717
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 20717 | positive | growth | 30 | mesophilic |
| 67771 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: facultative anaerobe
spore formation
- @ref: 67771
- type of spore: endospore
- spore formation: yes
observation
- @ref: 67771
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|---|
| 20717 | rhizospheric soil of Elymus tsukushiensis | Elymus tsukushiensis | Dokdo Island, Dongdo | Republic of Korea | KOR | Asia | ||
| 67771 | From rhizoshperic soil of `Elymus tsukushiensis` | Dongdo, Dokdo Island | Republic of Korea | KOR | Asia | 37.2378 | 131.873 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Rhizosphere |
Safety information
risk assessment
- @ref: 20717
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20717
- description: Paenibacillus dongdonensis strain KUDC0114 16S ribosomal RNA gene, partial sequence
- accession: KF425513
- length: 1369
- database: ena
- NCBI tax ID: 1476543
GC content
| @ref | GC-content | method |
|---|---|---|
| 20717 | 44.3 | high performance liquid chromatography (HPLC) |
| 67771 | 44.3 |
External links
@ref: 20717
culture collection no.: DSM 27607, KCTC 33221
straininfo link
- @ref: 88230
- straininfo: 401808
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24871779 | Paenibacillus dongdonensis sp. nov., isolated from rhizospheric soil of Elymus tsukushiensis. | Son JS, Kang HU, Ghim SY | Int J Syst Evol Microbiol | 10.1099/ijs.0.061077-0 | 2014 | Base Composition, DNA, Bacterial/genetics, Elymus/*microbiology, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 26721586 | Paenibacillus puernese sp. nov., a beta-glucosidase-producing bacterium isolated from Pu'er tea. | Wang DD, Kim YJ, Hoang VA, Nguyen NL, Singh P, Wang C, Chun-Yang D | Arch Microbiol | 10.1007/s00203-015-1180-6 | 2015 | Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, *Food Microbiology, Glucosidases/metabolism, Paenibacillus/*classification/enzymology/genetics, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Species Specificity | Biotechnology |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20717 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27607 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27607) | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 88230 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401808.1 |