Strain identifier
BacDive ID: 24256
Type strain: 
Species: Mumia flava
Strain history: <- L.-H. Lee, Monash Univ., Malaysia; MUSC 201
NCBI tax ID(s): 1348852 (species)
version 8.1 (current version)
General
@ref: 21329
BacDive-ID: 24256
DSM-Number: 27763
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Mumia flava DSM 27763 is a mesophilic, motile bacterium that was isolated from mangrove soil.
NCBI tax id
- NCBI tax id: 1348852
- Matching level: species
strain history
- @ref: 21329
- history: <- L.-H. Lee, Monash Univ., Malaysia; MUSC 201
doi: 10.13145/bacdive24256.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Mumia
- species: Mumia flava
- full scientific name: Mumia flava Lee et al. 2014
@ref: 21329
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardioidaceae
genus: Mumia
species: Mumia flava
full scientific name: Mumia flava Lee et al. 2014
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 97.216 | |
| 69480 | 99.806 | negative |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 21329 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
| 21329 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
culture temp
- @ref: 21329
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.214 |
Isolation, sampling and environmental information
isolation
- @ref: 21329
- sample type: mangrove soil
- geographic location: Kuantan, Pahang State
- country: Malaysia
- origin.country: MYS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Mangrove |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_35237.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_16939;97_20787;98_26019;99_35237&stattab=map
- Last taxonomy: Mumia flava subclade
- 16S sequence: KC907394
- Sequence Identity:
- Total samples: 65
- soil counts: 36
- aquatic counts: 14
- animal counts: 8
- plant counts: 7
Safety information
risk assessment
- @ref: 21329
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21329
- description: Mumia flava strain MUSC 201 16S ribosomal RNA gene, partial sequence
- accession: KC907394
- length: 1486
- database: ena
- NCBI tax ID: 1348852
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mumia flava DSM 27763 | GCA_002797495 | contig | ncbi | 1348852 |
| 66792 | Mumia flava strain DSM 27763 | 1348852.4 | wgs | patric | 1348852 |
| 66792 | Mumia flava DSM 27763 | 2731957516 | draft | img | 1348852 |
GC content
- @ref: 21329
- GC-content: 72.0
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 95.75 | no |
| gram-positive | yes | 93.426 | no |
| anaerobic | no | 99.145 | no |
| halophile | no | 81.282 | no |
| spore-forming | no | 80.264 | no |
| thermophile | no | 98.371 | yes |
| glucose-util | yes | 88.762 | no |
| aerobic | yes | 92.606 | no |
| flagellated | no | 99.089 | no |
| glucose-ferment | no | 93.079 | no |
External links
@ref: 21329
culture collection no.: DSM 27763, MCCC 1A00646, NBRC 109973, MUSC 201
straininfo link
- @ref: 88198
- straininfo: 407746
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24449791 | Mumia flava gen. nov., sp. nov., an actinobacterium of the family Nocardioidaceae. | Lee LH, Zainal N, Azman AS, Mutalib NA, Hong K, Chan KG | Int J Syst Evol Microbiol | 10.1099/ijs.0.058701-0 | 2014 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Malaysia, Molecular Sequence Data, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Genetics |
| Metabolism | 27027520 | Mumia xiangluensis sp. nov., isolated from the rhizosphere of Peucedanum praeruptorum Dunn. | Zhou S, Jia F, Liu C, Fan J, Li J, Bai Y, Wang X, Xiang W | Antonie Van Leeuwenhoek | 10.1007/s10482-016-0682-9 | 2016 | Bacterial Typing Techniques, Carbohydrate Metabolism, Cell Wall/metabolism, China, Chlorides/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Diaminopimelic Acid/metabolism, Fatty Acids/metabolism, Peptidoglycan/metabolism, Phospholipids/metabolism, Phylogeny, Propionibacteriaceae/*classification/genetics/*isolation & purification/metabolism, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, Soil Microbiology, Tracheophyta/*microbiology | Phylogeny |
| Phylogeny | 32100695 | Mumia zhuanghuii sp. nov., isolated from the intestinal contents of plateau pika (Ochotona curzoniae) on the Qinghai-Tibet Plateau. | Tian Z, Lu S, Jin D, Yang J, Pu J, Lai XH, Li J, Zhang S, Dong K, Lei W, Huang Y, Ren Z, Zhang D, Wang S, Xu J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003979 | 2020 | Actinobacteria/*classification/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Gastrointestinal Contents/*microbiology, Lagomorpha/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tibet, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21329 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27763 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27763) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 88198 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407746.1 |