Strain identifier
BacDive ID: 24252
Type strain: 
Species: Nocardioides opuntiae
Strain Designation: OS1-21
Strain history: <- SD Lee, Cheju Univ.
NCBI tax ID(s): 1756185 (species)
version 8.1 (current version)
General
@ref: 20685
BacDive-ID: 24252
DSM-Number: 23990
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Nocardioides opuntiae OS1-21 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from rhizosphere soil Opuntia fiscus-indica var. sanboten.
NCBI tax id
- NCBI tax id: 1756185
- Matching level: species
strain history
| @ref | history |
|---|---|
| 20685 | <- S. D. Lee, Jeju National Univ., Rep. of Korea; OSI-21 |
| 67771 | <- SD Lee, Cheju Univ. |
doi: 10.13145/bacdive24252.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Nocardioides
- species: Nocardioides opuntiae
- full scientific name: Nocardioides opuntiae Lee and Seong 2014
@ref: 20685
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardioidaceae
genus: Nocardioides
species: Nocardioides opuntiae
full scientific name: Nocardioides opuntiae Lee and Seong 2014
strain designation: OS1-21
type strain: yes
Morphology
cell morphology
- @ref: 67771
- gram stain: positive
Culture and growth conditions
culture temp
- @ref: 67771
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 20685 | rhizosphere soil Opuntia fiscus-indica var. sanboten | Opuntia fiscus-indica var. sanboten | Jeju, Mara Island | Republic of Korea | KOR | Asia |
| 67771 | From rhizosphere soil of `opuntia fiscus-indica var sanboten` | Jeju | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Xerophytic |
| #Host Body-Site | #Plant | #Rhizosphere |
Safety information
risk assessment
- @ref: 20685
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20685
- description: Nocardioides opuntiae partial 16S rRNA gene, type strain OS1-21T
- accession: FN178400
- length: 1426
- database: ena
- NCBI tax ID: 1756185
GC content
| @ref | GC-content | method |
|---|---|---|
| 20685 | 73.7 | high performance liquid chromatography (HPLC) |
| 67771 | 73.7 |
External links
@ref: 20685
culture collection no.: DSM 23990, KCTC 19804, NBRC 107915
straininfo link
- @ref: 88194
- straininfo: 404857
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24670898 | Nocardioides opuntiae sp. nov., isolated from soil of a cactus. | Lee SD, Seong CN | Int J Syst Evol Microbiol | 10.1099/ijs.0.060400-0 | 2014 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cactaceae/*microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 35834405 | Nocardioides nematodiphilus sp. nov., isolated from rhizosphere of Arabidopsis thaliana. | Zhang XM, Mo WT, Wei YQ, Li X, Ma GM, Yang YS, Wang XJ, Liu JJ, Liu ZY, Zhou XK, Zhang TK | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005271 | 2022 | *Actinomycetales, *Arabidopsis, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nocardioides, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, Soil Microbiology | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20685 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23990 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23990) | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 88194 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404857.1 |