Strain identifier
BacDive ID: 24245
Type strain: 
Species: Rhodococcus erythropolis
Strain Designation: NIO-1009
Strain history: <- S. Dastager, National Inst. of Oceanography, Anderheri, Mumbai; NIO-1009
NCBI tax ID(s): 334542 (species)
version 8.1 (current version)
General
@ref: 20763
BacDive-ID: 24245
DSM-Number: 45688
keywords: genome sequence, 16S sequence
description: Rhodococcus erythropolis NIO-1009 is a prokaryote that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 334542
- Matching level: species
strain history
- @ref: 20763
- history: <- S. Dastager, National Inst. of Oceanography, Anderheri, Mumbai; NIO-1009
doi: 10.13145/bacdive24245.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- genus: Rhodococcus
- species: Rhodococcus erythropolis
- full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980)
synonyms
@ref synonym 20215 Mycobacterium erythropolis 20215 Rhodococcus qingshengii 20215 Rhodococcus baikonurensis 20215 Rhodococcus jialingiae 20215 Rhodococcus enclensis 20215 Rhodococcus degradans
@ref: 20763
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus qingshengii
full scientific name: Rhodococcus enclensis Dastager et al. 2014
strain designation: NIO-1009
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 93.854 | |
| 69480 | 100 | positive |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.833
Isolation, sampling and environmental information
isolation
- @ref: 20763
- sample type: marine sediment
- geographic location: Chorao Island (15° 32' 34'' N 73° 55' 15'' E)
- country: India
- origin.country: IND
- continent: Asia
- latitude: 15.5428
- longitude: 73.9208
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_5123.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_2217;97_2684;98_3331;99_5123&stattab=map
- Last taxonomy: Rhodococcus
- 16S sequence: HQ858009
- Sequence Identity:
- Total samples: 9339
- soil counts: 1910
- aquatic counts: 1647
- animal counts: 3413
- plant counts: 2369
Sequence information
16S sequences
- @ref: 20763
- description: Rhodococcus enclensis strain NIO-1009 16S ribosomal RNA gene, partial sequence
- accession: HQ858009
- length: 1374
- database: ena
- NCBI tax ID: 1049584
Genome sequences
- @ref: 66792
- description: Rhodococcus enclensis strain NIO-1009
- accession: 1049584.4
- assembly level: wgs
- database: patric
- NCBI tax ID: 334542
GC content
- @ref: 20763
- GC-content: 66.9
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 86 | no |
| motile | no | 93.206 | no |
| flagellated | no | 98.088 | no |
| gram-positive | yes | 85.649 | no |
| anaerobic | no | 99.274 | no |
| aerobic | yes | 91.661 | no |
| halophile | no | 93.291 | no |
| spore-forming | no | 68.405 | no |
| thermophile | no | 99.536 | no |
| glucose-util | yes | 89.532 | no |
| glucose-ferment | no | 90.095 | no |
External links
@ref: 20763
culture collection no.: DSM 45688, NCIM 5452
literature
- topic: Phylogeny
- Pubmed-ID: 24854006
- title: Rhodococcus enclensis sp. nov., a novel member of the genus Rhodococcus.
- authors: Dastager SG, Mawlankar R, Tang SK, Krishnamurthi S, Ramana VV, Joseph N, Shouche YS
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.061390-0
- year: 2014
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, India, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodococcus/*classification/genetics/isolation & purification, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20763 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45688 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45688) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |