Strain identifier

BacDive ID: 24224

Type strain: Yes

Species: Acinetobacter kookii

Strain Designation: 11-0202

Strain history: CIP <- 2013, JCM <- K. S. Ko: strain 11-0202

NCBI tax ID(s): 1226327 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 20242

BacDive-ID: 24224

DSM-Number: 29071

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, ovoid-shaped

description: Acinetobacter kookii 11-0202 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil sample.

NCBI tax id

  • NCBI tax id: 1226327
  • Matching level: species

strain history

@refhistory
337172013, JCM strain: 18512
20242<- JCM <- K. S. Ko; 11-0202
67770K. S. Ko 11-0202.
67771<- KS Ko, Sungkyunkwan Univ.
120465CIP <- 2013, JCM <- K. S. Ko: strain 11-0202

doi: 10.13145/bacdive24224.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter kookii
  • full scientific name: Acinetobacter kookii Choi et al. 2013

@ref: 20242

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter kookii

full scientific name: Acinetobacter kookii Choi et al. 2013

strain designation: 11-0202

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotility
30938negativeovoid-shapedno
67771negative
120465negativeoval-shapedno

colony morphology

  • @ref: 20242
  • type of hemolysis: alpha/beta
  • hemolysis ability: 1
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33717MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
20242COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yesName: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar basehttps://mediadive.dsmz.de/medium/693
20242CASO AGAR (MERCK 105458) (DSMZ Medium 220)yesName: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/220
120465CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
20242positivegrowth37mesophilic
30938positivegrowth24-41
33717positivegrowth30mesophilic
63653positivegrowth30mesophilic
67770positivegrowth30mesophilic
67771positivegrowth24-40

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30938aerobe
63653aerobe
67771aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
30938620642,3-butanediol+carbon source
3093816236ethanol+carbon source
3093824996lactate+carbon source
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
20242catalase+1.11.1.6
20242cytochrome-c oxidase+1.9.3.1
30938catalase+1.11.1.6
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
20242--------+++++/-++-++++/-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
20242soil samplecity of JeonjuRepublic of KoreaKORAsia
63653SoilJeonjuRepublic of KoreaKORAsia
67770Soil in JeonjuRepublic of KoreaKORAsia
67771From soilAnsanRepublic of KoreaKORAsia
120465Environment, SoilJeonjuRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_19221.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_8;96_603;97_706;98_14531;99_19221&stattab=map
  • Last taxonomy: Acinetobacter
  • 16S sequence: JX137279
  • Sequence Identity:
  • Total samples: 80
  • soil counts: 7
  • aquatic counts: 31
  • animal counts: 35
  • plant counts: 7

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
202421Risk group (German classification)
1204651Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20242
  • description: Acinetobacter kookii strain 11-0202 16S ribosomal RNA gene, partial sequence
  • accession: JX137279
  • length: 1346
  • database: ena
  • NCBI tax ID: 1226327

External links

@ref: 20242

culture collection no.: DSM 29071, JCM 18512, KCTC 32033, CCUG 69703, CIP 110699

straininfo link

@refstraininfo
88167404855
88168408958

literature

  • topic: Phylogeny
  • Pubmed-ID: 23950148
  • title: Acinetobacter kookii sp. nov., isolated from soil.
  • authors: Choi JY, Ko G, Jheong W, Huys G, Seifert H, Dijkshoorn L, Ko KS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.047969-0
  • year: 2013
  • mesh: Acinetobacter/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Germany, Malaysia, Molecular Sequence Data, Netherlands, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Thailand
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20242Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29071Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29071)
30938Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172726828776041
33717Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/30506
63653Curators of the CCUGhttps://www.ccug.se/strain?id=69703Culture Collection University of Gothenburg (CCUG) (CCUG 69703)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88167Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID404855.1
88168Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID408958.1
120465Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110699Collection of Institut Pasteur (CIP 110699)