Strain identifier

BacDive ID: 24217

Type strain: Yes

Species: Planosporangium thailandense

Strain Designation: HSS8-18

Strain history: C. Thawai HSS8-18.

NCBI tax ID(s): 765197 (species)

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General

@ref: 21162

BacDive-ID: 24217

DSM-Number: 46738

keywords: 16S sequence, Bacteria, spore-forming, mesophilic, motile, ovoid-shaped

description: Planosporangium thailandense HSS8-18 is a spore-forming, mesophilic, motile bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 765197
  • Matching level: species

strain history

@refhistory
21162<- C Suriyachadkun, BCC; BCC 41917 <- C. Thawai
67770C. Thawai HSS8-18.

doi: 10.13145/bacdive24217.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Planosporangium
  • species: Planosporangium thailandense
  • full scientific name: Planosporangium thailandense Thawai et al. 2013

@ref: 21162

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Planosporangium

species: Planosporangium thailandense

full scientific name: Planosporangium thailandense Thawai et al. 2013

strain designation: HSS8-18

type strain: yes

Morphology

cell morphology

  • @ref: 30745
  • cell shape: ovoid-shaped
  • motility: yes

colony morphology

@refcolony colormedium used
69468Beige (1001), Maize yellow (1006)ISP 2
69468Beige (1001)ISP 7
69468Sand yellow (1002)ISP 5
69468Sand yellow (1002)suter with tyrosine

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69468noAerial myceliumISP 2
69468noAerial myceliumISP 5
69468noAerial myceliumISP 7
69468noAerial myceliumsuter with tyrosine

pigmentation

@refproductionname
30745yes
69468noMelanin
69468nosoluble pigment

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21162GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
21162ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
21162positivegrowth28mesophilic
30745positiveoptimum40thermophilic
67770positivegrowth37mesophilic

culture pH

  • @ref: 30745
  • ability: positive
  • type: optimum
  • pH: 5

Physiology and metabolism

spore formation

  • @ref: 30745
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
30745NaClpositivegrowth0-2 %
69468NaClpositivegrowth0 %

observation

  • @ref: 67770
  • observation: quinones: MK-10(H2), MK-9(H4), MK-10(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3074522599arabinose+carbon source
3074517057cellobiose+carbon source
3074528757fructose+carbon source
3074528260galactose+carbon source
3074517716lactose+carbon source
3074526546rhamnose+carbon source
3074533942ribose+carbon source
3074518222xylose+carbon source
6946822599arabinose+growth
6946862968cellulose+growth
6946828757fructose+growth
6946817234glucose+growth
6946817268inositol+growth
6946837684mannose+growth
6946816634raffinose+growth
6946826546rhamnose+growth
6946817992sucrose+growth
6946818222xylose+growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382lipase (C 14)-
68382valine arylamidase-
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382alpha-galactosidase-3.2.1.22
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69468------+------------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69468+/-+/-+/--+/--+/----+/--+/--++/-+/---

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
21162soilKrabiThailandTHAAsia
67770Soil from a hot spring pondKrabi ProvinceThailandTHAAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 21162
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21162
  • description: Planosporangium thailandense gene for 16S ribosomal RNA, partial sequence
  • accession: AB560970
  • length: 1415
  • database: ena
  • NCBI tax ID: 765197

GC content

@refGC-contentmethod
2116272
6777072high performance liquid chromatography (HPLC)

External links

@ref: 21162

culture collection no.: DSM 46738, BCC 41917, JCM 17129, NBRC 112720

straininfo link

  • @ref: 88160
  • straininfo: 403795

literature

  • topic: Phylogeny
  • Pubmed-ID: 22707531
  • title: Planosporangium thailandense sp. nov., isolated from soil from a Thai hot spring.
  • authors: Thawai C, Thamsathit W, Kudo T
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.043539-0
  • year: 2012
  • mesh: Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/analysis, Hot Springs/*microbiology, Micromonosporaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21162Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-46738Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46738)
30745Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172707628776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69468Wink, J.Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweighttps://cdn.dsmz.de/wink/DSM%2046738.pdf
88160Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403795.1