Strain identifier
BacDive ID: 24131
Type strain: 
Species: Schleiferilactobacillus shenzhenensis
Strain Designation: LY-73
Strain history: <- KACC; KACC 16878
NCBI tax ID(s): 1231337 (species)
version 8.1 (current version)
General
@ref: 20991
BacDive-ID: 24131
DSM-Number: 28193
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, rod-shaped
description: Schleiferilactobacillus shenzhenensis LY-73 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from fermented beverage.
NCBI tax id
- NCBI tax id: 1231337
- Matching level: species
strain history
- @ref: 20991
- history: <- KACC; KACC 16878
doi: 10.13145/bacdive24131.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Schleiferilactobacillus
- species: Schleiferilactobacillus shenzhenensis
- full scientific name: Schleiferilactobacillus shenzhenensis (Zou et al. 2013) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus shenzhenensis
@ref: 20991
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Schleiferilactobacillus
species: Schleiferilactobacillus shenzhenensis
full scientific name: Schleiferilactobacillus shenzhenensis (Zou et al. 2013) Zheng et al. 2020
strain designation: LY-73
type strain: yes
Morphology
cell morphology
- @ref: 30649
- gram stain: positive
- cell length: 3.75 µm
- cell width: 0.7 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30649
- production: yes
Culture and growth conditions
culture medium
- @ref: 20991
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 20991 | positive | growth | 37 | mesophilic |
| 30649 | positive | growth | 15-45 |
culture pH
- @ref: 30649
- ability: positive
- type: growth
- pH: 04-09
- PH range: alkaliphile
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 20991 | microaerophile |
| 30649 | facultative anaerobe |
spore formation
- @ref: 30649
- spore formation: no
halophily
- @ref: 30649
- salt: NaCl
- growth: positive
- tested relation: optimum
- concentration: 6 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30649 | 16808 | 2-dehydro-D-gluconate | + | carbon source |
| 30649 | 22599 | arabinose | + | carbon source |
| 30649 | 17057 | cellobiose | + | carbon source |
| 30649 | 28260 | galactose | + | carbon source |
| 30649 | 17754 | glycerol | + | carbon source |
| 30649 | 17716 | lactose | + | carbon source |
| 30649 | 17306 | maltose | + | carbon source |
| 30649 | 28053 | melibiose | + | carbon source |
| 30649 | 506227 | N-acetylglucosamine | + | carbon source |
| 30649 | 16634 | raffinose | + | carbon source |
| 30649 | 26546 | rhamnose | + | carbon source |
| 30649 | 33942 | ribose | + | carbon source |
| 30649 | 17814 | salicin | + | carbon source |
| 30649 | 17992 | sucrose | + | carbon source |
| 30649 | 27082 | trehalose | + | carbon source |
| 30649 | 4853 | esculin | + | hydrolysis |
Isolation, sampling and environmental information
isolation
- @ref: 20991
- sample type: fermented beverage
- geographic location: Shenzhen
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Fermented |
| #Engineered | #Food production | #Beverage |
taxonmaps
- @ref: 69479
- File name: preview.99_6570.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_3115;97_3816;98_4848;99_6570&stattab=map
- Last taxonomy: Schleiferilactobacillus shenzhenensis subclade
- 16S sequence: JX523627
- Sequence Identity:
- Total samples: 1443
- soil counts: 48
- aquatic counts: 34
- animal counts: 1323
- plant counts: 38
Safety information
risk assessment
- @ref: 20991
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20991
- description: Lactobacillus shenzhenensis LY-73 strain KACC 16878 16S ribosomal RNA gene, partial sequence
- accession: JX523627
- length: 1529
- database: ena
- NCBI tax ID: 1231336
Genome sequences
- @ref: 66792
- description: Schleiferilactobacillus shenzhenensis LY-73
- accession: GCA_000469325
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1231336
GC content
- @ref: 20991
- GC-content: 56.1
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 93.004 | yes |
| flagellated | no | 97.054 | yes |
| gram-positive | yes | 96.715 | no |
| anaerobic | no | 91.139 | yes |
| aerobic | no | 96.49 | yes |
| halophile | yes | 87.377 | yes |
| spore-forming | no | 87.822 | yes |
| thermophile | no | 98.209 | yes |
| glucose-util | yes | 90.81 | no |
| glucose-ferment | yes | 89.608 | no |
External links
@ref: 20991
culture collection no.: DSM 28193, CCTCC M 2011481, KACC 16878
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23002044 | Lactobacillus shenzhenensis sp. nov., isolated from a fermented dairy beverage. | Zou Y, Liu F, Fang C, Wan D, Yang R, Su Q, Yang R, Zhao J | Int J Syst Evol Microbiol | 10.1099/ijs.0.041111-0 | 2012 | Bacterial Typing Techniques, Base Composition, Beverages/*microbiology, China, DNA, Bacterial/genetics, Dairy Products/*microbiology, Fatty Acids/analysis, *Fermentation, Food Microbiology, Lactobacillus/*classification/genetics/isolation & purification, Molecular Sequence Data, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Biotechnology |
| 24265500 | Whole-Genome Sequencing of Lactobacillus shenzhenensis Strain LY-73T. | Lin Z, Liu Z, Yang R, Zou Y, Wan D, Chen J, Guo M, Zhao J, Fang C, Yang R, Liu F | Genome Announc | 10.1128/genomeA.00972-13 | 2013 |
Reference
| @id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 20991 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28193 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28193) | |||
| 30649 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26980 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |