Strain identifier

BacDive ID: 24128

Type strain: Yes

Species: Levilactobacillus koreensis

Strain Designation: N16

Strain history: <- DC Yang, Kyunghee Univ.

NCBI tax ID(s): 1423819 (strain), 637971 (species)

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General

@ref: 20988

BacDive-ID: 24128

DSM-Number: 27983

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, motile, rod-shaped

description: Levilactobacillus koreensis N16 is a microaerophile, mesophilic, motile bacterium that was isolated from cabbage kimchi.

NCBI tax id

NCBI tax idMatching level
637971species
1423819strain

strain history

@refhistory
20988<- JCM; JCM 16448 <- D.-C. Yang, Kyung Hee University, Gyeonggi-do, South Korea; DCY50
67770D.-C. Yang DCY50 (=N16).
67771<- DC Yang, Kyunghee Univ.

doi: 10.13145/bacdive24128.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Levilactobacillus
  • species: Levilactobacillus koreensis
  • full scientific name: Levilactobacillus koreensis (Bui et al. 2011) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus koreensis

@ref: 20988

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Levilactobacillus

species: Levilactobacillus koreensis

full scientific name: Levilactobacillus koreensis (Bui et al. 2011) Zheng et al. 2020

strain designation: N16

type strain: yes

Morphology

cell morphology

@refcell shapemotilitygram stain
67771rod-shapedyes
67771curved-shaped
67771positive

Culture and growth conditions

culture medium

  • @ref: 20988
  • name: PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/231
  • composition: Name: PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Yeast extract 5.0 g/l Na-acetate 5.0 g/l K2HPO4 2.0 g/l (NH4)3 citrate 2.0 g/l Tween 80 1.0 g/l Cysteine hydrochloride 0.5 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20988positivegrowth30mesophilic
67770positivegrowth30mesophilic
67771positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
20988microaerophile
67771facultative anaerobe

spore formation

  • @ref: 67771
  • spore formation: no

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol+builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin+builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
20988------+----++------------+--+----------------+----

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
20988cabbage kimchiRepublic of KoreaKORAsia
67770Kimchi
67771From cabbage kimchi(traditional Korean fermented food)Republic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Vegetable (incl. Grains)
#Host#Plants#Herbaceous plants (Grass,Crops)
#Engineered#Food production#Fermented

taxonmaps

  • @ref: 69479
  • File name: preview.99_3900.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_484;97_553;98_1175;99_3900&stattab=map
  • Last taxonomy: Levilactobacillus
  • 16S sequence: LC145563
  • Sequence Identity:
  • Total samples: 1243
  • soil counts: 164
  • aquatic counts: 140
  • animal counts: 727
  • plant counts: 212

Safety information

risk assessment

  • @ref: 20988
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20988Lactobacillus koreensis strain DCY50 16S ribosomal RNA gene, partial sequenceFJ9042771461ena1423819
67771Lactobacillus koreensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 16448LC1455631502ena1423819

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus koreensis JCM 164481423819.3wgspatric1423819
66792Levilactobacillus koreensis JCM 164482667527871draftimg1423819
67771Levilactobacillus koreensis JCM 16448GCA_001435525scaffoldncbi1423819

GC content

@refGC-contentmethod
2098849
6777049high performance liquid chromatography (HPLC)
6777149.6genome sequence analysis
6777149.0high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno93.915no
gram-positiveyes97.239yes
anaerobicno91.653yes
halophileyes90.247no
spore-formingno92.309yes
thermophileno99.486no
glucose-utilyes92.999no
aerobicno95.153yes
flagellatedno98.751no
glucose-fermentyes83.325no

External links

@ref: 20988

culture collection no.: DSM 27983, JCM 16448, KCTC 13530, DCY 50, BCRC 81078

straininfo link

  • @ref: 88087
  • straininfo: 405033

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20435754Lactobacillus koreensis sp. nov., isolated from the traditional Korean food kimchi.Bui TPN, Kim YJ, In JG, Yang DCInt J Syst Evol Microbiol10.1099/ijs.0.021386-02010Aerobiosis, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, *Food Microbiology, Korea, Lactobacillus/*classification/genetics/*isolation & purification/physiology, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNABiotechnology
Phylogeny23475345Lactobacillus yonginensis sp. nov., a lactic acid bacterium with ginsenoside converting activity isolated from Kimchi.Yi EJ, Yang JE, Lee JM, Park Y, Park SY, Shin HS, Kook M, Yi THInt J Syst Evol Microbiol10.1099/ijs.0.045799-02013Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Fermentation, *Food Microbiology, Ginsenosides/*metabolism, Lactic Acid, Lactobacillus/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNABiotechnology
Phylogeny28867002Lactobacillus cerevisiae sp. nov., isolated from a spoiled brewery sample.Koob J, Jacob F, Wenning M, Hutzler MInt J Syst Evol Microbiol10.1099/ijsem.0.0021392017Bacterial Typing Techniques, Base Composition, Beer/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Germany, Lactobacillus/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Phylogeny32129738Lactobacillus enshiensis sp. nov., a novel arsenic-resistant bacterium.Zhang Z, Wang Y, Hou Q, Zhao H, Li W, Sun Z, Guo ZInt J Syst Evol Microbiol10.1099/ijsem.0.0040722020*Arsenic, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, Fermented Foods/*microbiology, *Food Microbiology, Lactic Acid/biosynthesis, Lactobacillus/*classification/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNABiotechnology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20988Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27983Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27983)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88087Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405033.1