Strain identifier

BacDive ID: 24125

Type strain: No

Species: Lactobacillus sp.

Strain Designation: 66C

Strain history: <- S. Cousin, CIP, Genopole, Paris, France; CRBIP 24.137 <- F. Gasser, CIP <- Mr. Segoud, Lab. Nutrition et Securite Alimentaire, INRA, France

NCBI tax ID(s): 1591 (species)

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General

@ref: 20985

BacDive-ID: 24125

DSM-Number: 23909

keywords: genome sequence, Bacteria, microaerophile, mesophilic

description: Lactobacillus sp. 66C is a microaerophile, mesophilic bacterium that was isolated from human urine.

NCBI tax id

  • NCBI tax id: 1591
  • Matching level: species

strain history

  • @ref: 20985
  • history: <- S. Cousin, CIP, Genopole, Paris, France; CRBIP 24.137 <- F. Gasser, CIP <- Mr. Segoud, Lab. Nutrition et Securite Alimentaire, INRA, France

doi: 10.13145/bacdive24125.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactobacillus
  • species: Lactobacillus sp.
  • full scientific name: Lactobacillus Beijerinck 1901 (Approved Lists 1980)

@ref: 20985

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactobacillus

species: Lactobacillus sp.

full scientific name: Lactobacillus sp.

strain designation: 66C

type strain: no

Culture and growth conditions

culture medium

  • @ref: 20985
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

  • @ref: 20985
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 20985
  • oxygen tolerance: microaerophile

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
20985-----------+++--------+-++--+/-+/--+------------------

Isolation, sampling and environmental information

isolation

  • @ref: 20985
  • sample type: human urine
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Urine

Sequence information

Genome sequences

  • @ref: 66792
  • description: Lactobacillus sp. 66c
  • accession: 872326.3
  • assembly level: wgs
  • database: patric
  • NCBI tax ID: 872326

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno94.502no
flagellatedno97.141no
gram-positiveyes93.884no
anaerobicyes51.254yes
halophileyes80.413no
spore-formingno96.006no
thermophileno98.282no
glucose-utilyes89.815no
aerobicno98.482yes
glucose-fermentyes89.951no

External links

@ref: 20985

culture collection no.: DSM 23909, CRBIP24.137

straininfo link

  • @ref: 88084
  • straininfo: 397653

literature

  • topic: Genetics
  • Pubmed-ID: 23969063
  • title: Draft Genome Sequences of Lactobacillus equicursoris CIP 110162T and Lactobacillus sp. Strain CRBIP 24.137, Isolated from Thoroughbred Racehorse Feces and Human Urine, Respectively.
  • authors: Cousin S, Loux V, Ma L, Creno S, Clermont D, Bizet C, Bouchier C
  • journal: Genome Announc
  • DOI: 10.1128/genomeA.00663-13
  • year: 2013
  • topic2: Phylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20985Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-23909Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23909)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
88084Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397653.1