Strain identifier

BacDive ID: 24117

Type strain: Yes

Species: Fusicatenibacter saccharivorans

Strain Designation: HT03-11

Strain history: T. Takada HT03-11 (=YIT 12554).

NCBI tax ID(s): 1150298 (species)

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General

@ref: 21279

BacDive-ID: 24117

DSM-Number: 26062

keywords: 16S sequence, Bacteria, anaerobe, Gram-positive, rod-shaped

description: Fusicatenibacter saccharivorans HT03-11 is an anaerobe, Gram-positive, rod-shaped bacterium that was isolated from feces of healthy Japanese adult.

NCBI tax id

  • NCBI tax id: 1150298
  • Matching level: species

strain history

@refhistory
21279<- T. Takada, Yakult Central Inst. Microbiol. Res., Kunitachi, Japan; YIT 12554 <- T. Takada {2012}
67770T. Takada HT03-11 (=YIT 12554).

doi: 10.13145/bacdive24117.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Lachnospiraceae
  • genus: Fusicatenibacter
  • species: Fusicatenibacter saccharivorans
  • full scientific name: Fusicatenibacter saccharivorans Takada et al. 2013

@ref: 21279

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Lachnospiraceae

genus: Fusicatenibacter

species: Fusicatenibacter saccharivorans

full scientific name: Fusicatenibacter saccharivorans Takada et al. 2013

strain designation: HT03-11

type strain: yes

Morphology

cell morphology

  • @ref: 30848
  • gram stain: positive
  • cell length: 8.25 µm
  • cell width: 0.75 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 30848
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 21279
  • name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/104c
  • composition: Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

@refgrowthtypetemperature
21279positivegrowth37
67770positivegrowth37

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
21279anaerobe
30848anaerobe

spore formation

  • @ref: 30848
  • spore formation: no

observation

  • @ref: 30848
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3084822599arabinose+carbon source
3084817057cellobiose+carbon source
3084817234glucose+carbon source
3084817716lactose+carbon source
3084817306maltose+carbon source
3084837684mannose+carbon source
3084816634raffinose+carbon source
3084826546rhamnose+carbon source
3084817814salicin+carbon source
3084830911sorbitol+carbon source
3084817992sucrose+carbon source
3084827082trehalose+carbon source
3084818222xylose+carbon source
308484853esculin+hydrolysis

enzymes

@refvalueactivityec
30848acid phosphatase+3.1.3.2
30848alkaline phosphatase+3.1.3.1
30848alpha-galactosidase+3.2.1.22

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
21279feces of healthy Japanese adultJapanJPNAsia
67770Human feces

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_5851.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_2806;97_3446;98_4352;99_5851&stattab=map
  • Last taxonomy: Fusicatenibacter saccharivorans subclade
  • 16S sequence: AB698910
  • Sequence Identity:
  • Total samples: 52669
  • soil counts: 209
  • aquatic counts: 1094
  • animal counts: 51324
  • plant counts: 42

Safety information

risk assessment

  • @ref: 21279
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21279
  • description: Fusicatenibacter saccharivorans gene for 16S ribosomal RNA, partial sequence, strain: HT03-11
  • accession: AB698910
  • length: 1423
  • database: nuccore
  • NCBI tax ID: 1150298

GC content

@refGC-contentmethod
2127946.9high performance liquid chromatography (HPLC)
3084846.9

External links

@ref: 21279

culture collection no.: DSM 26062, JCM 18507, YIT 12554, KCTC 15502

straininfo link

  • @ref: 88077
  • straininfo: 399907

literature

  • topic: Phylogeny
  • Pubmed-ID: 23625266
  • title: Fusicatenibacter saccharivorans gen. nov., sp. nov., isolated from human faeces.
  • authors: Takada T, Kurakawa T, Tsuji H, Nomoto K
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.045823-0
  • year: 2013
  • mesh: Adult, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Feces/*microbiology, Gram-Positive Asporogenous Rods/*classification/genetics/isolation & purification, Humans, Lysine/analysis, Middle Aged, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Pathogenicity

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21279Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26062Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26062)
30848Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172717828776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88077Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399907.1