Strain identifier
BacDive ID: 24106
Type strain: 
Species: Hyphomonas rosenbergii
Strain Designation: VP6
Strain history: <- R. M. Weiner, Univ. of Maryland, Cell Biol. and Mol. Genetics, College Park, USA; VP6 <- H. W. Jannasch, Woods Hole Oceanographic Inst. The strain deposited in the DSMZ has a 16S rRNA gene sequence that is not identical with AF082795, but is identical with KF880383 (from ATCC 43869). We conclude that either no authentic type strain is available or that AF082795 is not derived from the authentic type strain
NCBI tax ID(s): 81034 (species)
General
@ref: 20610
BacDive-ID: 24106
DSM-Number: 17769
keywords: 16S sequence, Bacteria, mesophilic
description: Hyphomonas rosenbergii VP6 is a mesophilic bacterium that was isolated from seawater in thermal vent.
NCBI tax id
- NCBI tax id: 81034
- Matching level: species
strain history
- @ref: 20610
- history: <- R. M. Weiner, Univ. of Maryland, Cell Biol. and Mol. Genetics, College Park, USA; VP6 <- H. W. Jannasch, Woods Hole Oceanographic Inst. The strain deposited in the DSMZ has a 16S rRNA gene sequence that is not identical with AF082795, but is identical with KF880383 (from ATCC 43869). We conclude that either no authentic type strain is available or that AF082795 is not derived from the authentic type strain
doi: 10.13145/bacdive24106.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Caulobacterales
- family: Hyphomonadaceae
- genus: Hyphomonas
- species: Hyphomonas rosenbergii
- full scientific name: Hyphomonas rosenbergii Weiner et al. 2000
@ref: 20610
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Caulobacterales
family: Hyphomonadaceae
genus: Hyphomonas
species: Hyphomonas rosenbergii
full scientific name: Hyphomonas rosenbergii Weiner et al. 2000
strain designation: VP6
type strain: yes
Culture and growth conditions
culture medium
- @ref: 20610
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 20610
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 20610
- sample type: seawater in thermal vent
- geographic location: Guayamas vent region, Gulf of Mexico
- country: Guyana
- origin.country: GUY
- continent: Middle and South America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Hydrothermal vent |
| #Environmental | #Aquatic | #Marine |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 20610
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20610 | Hyphomonas rosenbergii 16S ribosomal RNA gene, partial sequence | AF082795 | 1354 | ena | 81034 |
| 20610 | Hyphomonas rosenbergii strain ATCC 43869 16S ribosomal RNA gene, partial sequence | KF880383 | 1418 | ena | 81034 |
GC content
- @ref: 20610
- GC-content: 61
External links
@ref: 20610
culture collection no.: DSM 17769, ATCC 43869
straininfo link
- @ref: 88066
- straininfo: 42094
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 10758848 | Hyphomonas adhaerens sp. nov., Hyphomonas johnsonii sp. nov. and Hyphomonas rosenbergii sp. nov., marine budding and prosthecate bacteria. | Weiner RM, Melick M, O'Neill K, Quintero E | Int J Syst Evol Microbiol | 10.1099/00207713-50-2-459 | 2000 | Alphaproteobacteria/chemistry/*classification/isolation & purification/physiology, Antibodies, Monoclonal/immunology, Antigens, Bacterial/immunology, Bacteria/chemistry/*classification/isolation & purification, Bacterial Physiological Phenomena, Bacterial Proteins/analysis, Base Composition, DNA, Bacterial/analysis/genetics, DNA, Ribosomal/analysis/genetics, Fatty Acids/analysis, Membrane Proteins/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Water Microbiology | Enzymology |
| Phylogeny | 25602083 | The status of the species Hyphomonas rosenbergii Weiner et al. 2000. Request for an Opinion. | Lai Q, Li C, Shao Z | Int J Syst Evol Microbiol | 10.1099/ijs.0.066118-0 | 2015 | Alphaproteobacteria/*classification/genetics, DNA, Bacterial/genetics, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Terminology as Topic | Genetics |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20610 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17769 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17769) | |
| 88066 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID42094.1 |