Strain identifier
BacDive ID: 24105
Type strain: 
Species: Hyphomicrobium sp.
Strain Designation: MC1
Strain history: <- A. M. Cook, ETHZ; MC1
NCBI tax ID(s): 82 (species)
version 8.1 (current version)
General
@ref: 20609
BacDive-ID: 24105
DSM-Number: 3646
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Hyphomicrobium sp. MC1 is a mesophilic bacterium that was isolated from Industrial sewage plant.
NCBI tax id
- NCBI tax id: 82
- Matching level: species
strain history
- @ref: 20609
- history: <- A. M. Cook, ETHZ; MC1
doi: 10.13145/bacdive24105.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Hyphomicrobiaceae
- genus: Hyphomicrobium
- species: Hyphomicrobium sp.
- full scientific name: Hyphomicrobium Stutzer and Hartleb 1899 (Approved Lists 1980)
@ref: 20609
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Hyphomicrobiaceae
genus: Hyphomicrobium
species: Hyphomicrobium sp.
full scientific name: Hyphomicrobium sp.
strain designation: MC1
type strain: no
Culture and growth conditions
culture medium
- @ref: 20609
- name: HYPHOMICROBIUM MEDIUM (DSMZ Medium 162)
- growth: yes
- link: https://mediadive.dsmz.de/medium/162
- composition: Name: HYPHOMICROBIUM MEDIUM (DSMZ Medium 162) Composition: Methylamine hydrochloride 3.38 g/l Na2HPO4 2.13 g/l KH2PO4 1.36 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l Yeast extract 0.1 g/l CaCl2 x 2 H2O 0.006 g/l FeSO4 x 7 H2O 0.003 g/l Na2MoO4 x 2 H2O 0.0015 g/l MnSO4 x H2O 0.001 g/l Distilled water
culture temp
- @ref: 20609
- growth: positive
- type: growth
- temperature: 25-30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 20609
- sample type: Industrial sewage plant
- geographic location: Basel
- country: Switzerland
- origin.country: CHE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Waste | #Industrial wastewater |
| #Engineered | #Waste | #Water treatment plant |
taxonmaps
- @ref: 69479
- File name: preview.99_4636.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_244;96_928;97_1080;98_1289;99_4636&stattab=map
- Last taxonomy: Hyphomicrobium sp.
- 16S sequence: FN667863
- Sequence Identity:
- Total samples: 1252
- soil counts: 509
- aquatic counts: 360
- animal counts: 102
- plant counts: 281
Sequence information
16S sequences
- @ref: 20609
- description: Hyphomicrobium sp. MC1 partial 16S rRNA gene, strain MC1
- accession: FN667863
- length: 1421
- database: ena
- NCBI tax ID: 717785
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Hyphomicrobium sp. MC1 | GCA_000253295 | complete | ncbi | 717785 |
| 66792 | Hyphomicrobium sp. MC1 | 82.3 | complete | patric | 717785 |
| 66792 | Hyphomicrobium sp. MC1 | 650716042 | complete | img | 717785 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 79.311 | no |
| flagellated | no | 76.053 | no |
| gram-positive | no | 98.292 | no |
| anaerobic | no | 98.892 | no |
| aerobic | yes | 88.734 | no |
| halophile | no | 87.914 | no |
| spore-forming | no | 95.896 | no |
| glucose-util | yes | 78.519 | no |
| thermophile | no | 96.262 | yes |
| glucose-ferment | no | 92.903 | no |
External links
@ref: 20609
culture collection no.: DSM 3646
straininfo link
- @ref: 88065
- straininfo: 401798
literature
- topic: Metabolism
- Pubmed-ID: 36385348
- title: Methylotrophic bacteria with cobalamin-dependent mutases in primary metabolism as potential strains for vitamin B(12) production.
- authors: Dudko D, Holtmann D, Buchhaupt M
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-022-01795-9
- year: 2022
- topic2: Biotechnology
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20609 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3646 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3646) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 88065 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401798.1 |