Strain identifier

BacDive ID: 24099

Type strain: No

Species: Campylobacter pylori

Strain Designation: ASTRA J99, J99

Strain history: <- CCUG <- J. Tang, ATCC <- M. J. Jones <- M. J. Blaser

NCBI tax ID(s): 210 (species)

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General

@ref: 20491

BacDive-ID: 24099

DSM-Number: 28160

keywords: Bacteria, microaerophile, mesophilic

description: Campylobacter pylori ASTRA J99 is a microaerophile, mesophilic bacterium that was isolated from Human duodenal ulcer.

NCBI tax id

  • NCBI tax id: 210
  • Matching level: species

strain history

  • @ref: 20491
  • history: <- CCUG <- J. Tang, ATCC <- M. J. Jones <- M. J. Blaser

doi: 10.13145/bacdive24099.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter pylori
  • full scientific name: Campylobacter pylori corrig. Marshall et al. 1985

  • synonyms

    @refsynonym
    20215Campylobacter pyloridis
    20215Helicobacter pylori
    20215Helicobacter nemestrinae

@ref: 20491

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Helicobacteraceae

genus: Helicobacter

species: Helicobacter pylori

full scientific name: Helicobacter pylori (Marshall et al. 1985) Goodwin et al. 1989

strain designation: ASTRA J99, J99

type strain: no

Morphology

colony morphology

  • @ref: 20491
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

  • @ref: 20491
  • name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/693
  • composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
20491positivegrowth37mesophilic
57547positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 57547
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837316199urea+hydrolysis
6837317632nitrate-reduction
68373606565hippurate-hydrolysis
6837317634D-glucose-assimilation
6837330031succinate-assimilation
6837330089acetate-assimilation
6837317272propionate-assimilation
6837325115malate-assimilation
6837316947citrate-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg

metabolite production

  • @ref: 68373
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

enzymes

@refvalueactivityec
68373catalase+1.11.1.6
68373alkaline phosphatase+3.1.3.1
68373L-aspartate arylamidase-3.4.11.21
68373L-arginine arylamidase-
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase+2.3.2.2
68373esterase-
68373urease+3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57547C12:00.612
    57547C13:01.713
    57547C14:039.514
    57547C15:04.115
    57547C16:02.516
    57547C17:00.617
    57547C18:04.718
    57547C19:01.119
    57547C13:0 ISO 2OH0.513.814
    57547C13:1 at 12-130.312.931
    57547C16:0 3OH1.317.52
    57547C16:0 aldehyde114.949
    57547C16:1 ω7c0.515.819
    57547C17:0 3OH0.618.535
    57547C17:1 ω6c0.316.862
    57547C18:0 3OH2.319.551
    57547C18:1 ω5c0.417.919
    57547C18:1 ω7c /12t/9t6.317.824
    57547C18:1 ω9c0.417.769
    57547C18:2 ω6,9c/C18:0 ANTE0.817.724
    57547C19:0 CYCLO ω8c29.718.9
    57547C20:2 ω6,9c0.319.735
    57547Unidentified0.213.936
    57547Unidentified0.218.073
    57547Unidentified0.319.884
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
20491+---++---+----------
20491+---+----+----------+
20491+---+----+----------+

Isolation, sampling and environmental information

isolation

@refsample typesampling datecountryorigin.countrycontinent
57547Human duodenal ulcer1994USAUSANorth America
20491human duodenal ulcerUSAUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Gastrointestinal tract#Small intestine
#Host Body-Site#Other#Wound
#Host#Human

Safety information

risk assessment

  • @ref: 20491
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

External links

@ref: 20491

culture collection no.: DSM 28160, CCUG 47164, ATCC 700824, DSM 105295

straininfo link

  • @ref: 88061
  • straininfo: 87759

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20491Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28160Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28160)
57547Curators of the CCUGhttps://www.ccug.se/strain?id=47164Culture Collection University of Gothenburg (CCUG) (CCUG 47164)
68373Automatically annotated from API CAM
88061Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID87759.1