Strain identifier
BacDive ID: 24056
Type strain: 
Species: Geodermatophilus sp.
Strain history: <- C. Urzi, Univ. Messina; BC620
NCBI tax ID(s): 1528104 (species)
version 8.1 (current version)
General
@ref: 20581
BacDive-ID: 24056
DSM-Number: 44513
keywords: genome sequence, Bacteria, spore-forming, mesophilic, Gram-positive
description: Geodermatophilus sp. DSM 44513 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from marble EF-8.
NCBI tax id
- NCBI tax id: 1528104
- Matching level: species
strain history
- @ref: 20581
- history: <- C. Urzi, Univ. Messina; BC620
doi: 10.13145/bacdive24056.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Geodermatophilales
- family: Geodermatophilaceae
- genus: Geodermatophilus
- species: Geodermatophilus sp.
- full scientific name: Geodermatophilus Luedemann 1968 (Approved Lists 1980)
synonyms
@ref synonym 20215 Pleomorpha 20215 Petropleomorpha
@ref: 20581
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Geodermatophilaceae
genus: Geodermatophilus
species: Geodermatophilus sp.
full scientific name: Geodermatophilus sp.
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
multimedia
| @ref | multimedia content | caption | intellectual property rights |
|---|---|---|---|
| 66793 | EM_DSM_44513_1.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_44513_2.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_44513_3.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_44513_30.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_44513_4.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_44513_5.jpg | electron microscopic image | © HZI/Manfred Rohde |
Culture and growth conditions
culture medium
- @ref: 20581
- name: LUEDEMANN MEDIUM (LUEDEMANN; 1968) (DSMZ Medium 877)
- growth: yes
- link: https://mediadive.dsmz.de/medium/877
- composition: Name: LUEDEMANN MEDIUM (LUEDEMANN; 1968) (DSMZ Medium 877) Composition: Malt extract broth 15.0 g/l Agar 15.0 g/l Glucose 10.0 g/l Starch 10.0 g/l NaCl 5.0 g/l Yeast extract 5.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 20581
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: yes
- confidence: 98
Isolation, sampling and environmental information
isolation
- @ref: 20581
- sample type: marble EF-8
- geographic location: Belevi, Ephesos
- country: Turkey
- origin.country: TUR
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Geologic
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Geodermatophilus sp. DSM 44513 | 1528104.3 | wgs | patric | 1528104 |
| 66792 | Geodermatophilus turciae DSM 44513 | 2585427555 | draft | img | 1528104 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 98 | no |
| motile | yes | 80.923 | no |
| gram-positive | yes | 92.476 | no |
| anaerobic | no | 98.369 | no |
| aerobic | yes | 92.273 | no |
| halophile | no | 83.477 | no |
| spore-forming | no | 62.458 | no |
| glucose-util | yes | 85.616 | no |
| flagellated | no | 91.675 | no |
| thermophile | no | 97.195 | yes |
| glucose-ferment | no | 89.977 | no |
External links
@ref: 20581
culture collection no.: DSM 44513, BC 620
straininfo link
- @ref: 88027
- straininfo: 396547
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 20581 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44513 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44513) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66793 | Mukherjee et al. | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 10.1038/nbt.3886 | 35: 676-683 2017 | 28604660 | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 88027 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396547.1 |