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Strain identifier

BacDive ID: 24056

Type strain: No

Species: Geodermatophilus sp.

Strain history: <- C. Urzi, Univ. Messina; BC620

NCBI tax ID(s): 1528104 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20581

BacDive-ID: 24056

DSM-Number: 44513

keywords: genome sequence, Bacteria, mesophilic

description: Geodermatophilus sp. DSM 44513 is a mesophilic bacterium that was isolated from marble EF-8.

NCBI tax id

  • NCBI tax id: 1528104
  • Matching level: species

strain history: <- C. Urzi, Univ. Messina; BC620

doi: 10.13145/bacdive24056.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Geodermatophilales
  • family: Geodermatophilaceae
  • genus: Geodermatophilus
  • species: Geodermatophilus sp.
  • full scientific name: Geodermatophilus Luedemann 1968 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Pleomorpha

@ref: 20581

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Geodermatophilaceae

genus: Geodermatophilus

species: Geodermatophilus sp.

full scientific name: Geodermatophilus sp.

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 97.21

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_44513_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_44513_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_44513_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_44513_30.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_44513_4.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_44513_5.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

  • @ref: 20581
  • name: LUEDEMANN MEDIUM (LUEDEMANN; 1968) (DSMZ Medium 877)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/877
  • composition: Name: LUEDEMANN MEDIUM (LUEDEMANN; 1968) (DSMZ Medium 877) Composition: Malt extract broth 15.0 g/l Agar 15.0 g/l Glucose 10.0 g/l Starch 10.0 g/l NaCl 5.0 g/l Yeast extract 5.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 20581
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: yes
  • confidence: 52.673

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 91.914

Isolation, sampling and environmental information

isolation

  • @ref: 20581
  • sample type: marble EF-8
  • geographic location: Belevi, Ephesos
  • country: Turkey
  • origin.country: TUR
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Geologic

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Geodermatophilus sp. DSM 445131528104.3wgspatric1528104
66792Geodermatophilus turciae DSM 445132585427555draftimg1528104
66792uncultured Porphyromonadaceae bacterium ERR8099097_bin.11_metawrap_v1.3_MAGGCA_947038365contigpatric348578

External links

@ref: 20581

culture collection no.: DSM 44513, BC 620

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20581Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-44513Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44513)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66793Mukherjee et al.GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life10.1038/nbt.3886 35: 676-683 201728604660
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes