Strain identifier

BacDive ID: 24042

Type strain: Yes

Species: Chryseobacterium arachidis

Strain Designation: 91A-593

Strain history: CIP <- 2013, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 91A-593

NCBI tax ID(s): 1416778 (species)

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General

@ref: 20937

BacDive-ID: 24042

DSM-Number: 27619

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Chryseobacterium arachidis 91A-593 is a mesophilic bacterium that was isolated from geocarposphere of very immature peanuts .

NCBI tax id

  • NCBI tax id: 1416778
  • Matching level: species

strain history

@refhistory
20937<- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; 91A-593 <- J. Mcinroy
116467CIP <- 2013, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 91A-593

doi: 10.13145/bacdive24042.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium arachidis
  • full scientific name: Chryseobacterium arachidis Kämpfer et al. 2014

@ref: 20937

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Weeksellaceae

genus: Chryseobacterium

species: Chryseobacterium arachidis

full scientific name: Chryseobacterium arachidis Kämpfer et al. 2014

strain designation: 91A-593

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no93.491
6948099.975negative
116467nonegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
36273MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
20937CASO AGAR (MERCK 105458) (DSMZ Medium 220)yesName: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/220
116467CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
20937positivegrowth28mesophilic
36273positivegrowth30mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.996

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
20937geocarposphere (soil around the pod) of very immature peanuts (Arachis hypogaea)Arachis hypogaeaAlabama, Henry county, Headland, Wiregrass Research and Extension CenterUSAUSANorth America
116467Environment, Soil sampleUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_4647.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_206;97_225;98_3487;99_4647&stattab=map
  • Last taxonomy: Chryseobacterium
  • 16S sequence: HG738134
  • Sequence Identity:
  • Total samples: 244
  • soil counts: 45
  • aquatic counts: 49
  • animal counts: 76
  • plant counts: 74

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
209371Risk group (German classification)
1164671Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20937
  • description: Chryseobacterium arachidis partial 16S rRNA gene, type strain 91A-593T
  • accession: HG738134
  • length: 1440
  • database: ena
  • NCBI tax ID: 1416778

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Chryseobacterium arachidis DSM 27619GCA_900129245contigncbi1416778
66792Chryseobacterium arachidis strain DSM 276191416778.5wgspatric1416778
66792Chryseobacterium arachidis DSM 276192695420930draftimg1416778

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno89.216no
gram-positiveno97.974no
anaerobicno99.557no
halophileno95.682no
spore-formingno95.288no
glucose-utilyes88.57no
thermophileno99.269no
aerobicyes90.028no
flagellatedno95.693no
glucose-fermentno91.454no

External links

@ref: 20937

culture collection no.: DSM 27619, CCM 8489, LMG 27813, CIP 110646

straininfo link

  • @ref: 88015
  • straininfo: 390475

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24379020Chryseobacterium zeae sp. nov., Chryseobacterium arachidis sp. nov., and Chryseobacterium geocarposphaerae sp. nov. isolated from the rhizosphere environment.Kampfer P, McInroy JA, Glaeser SPAntonie Van Leeuwenhoek10.1007/s10482-013-0101-42013Bacteriophage Typing, Chryseobacterium/*classification/genetics/isolation & purification/metabolism, Cluster Analysis, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, *Soil MicrobiologyMetabolism
Phylogeny27522654Chryseobacterium zhengzhouense sp. nov., isolated from groundwater of the well in a vegetable field, and emended description of the genus Chryseobacterium.Wang YN, He WH, An ML, Tian WY, You XY, Ying FQ, Guo J, Gong TAntonie Van Leeuwenhoek10.1007/s10482-016-0747-92016Agriculture, Base Composition, China, Chryseobacterium/classification/*isolation & purification, DNA, Bacterial, Groundwater/*microbiology, Molecular Typing, Phylogeny, Vegetables, Water MicrobiologyEnzymology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20937Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27619Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27619)
36273Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/30450
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88015Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID390475.1
116467Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110646Collection of Institut Pasteur (CIP 110646)